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… technologies.  The exponential growth of DNA sequencing data, coupled with recent computational technology advances … in management, processing and visualization of “big data,” and artificial Intelligent/machine learning … data science.  Research in the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. The …

… Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected as the 2025 recipient of the Microbiome Data Prize by the American …

… Data produced and released by the US Department of Energy … Joint Genome Institute (JGI) are subject to the following Data Policy. It is our mission to support open data and information sharing. We also recognize the need to … Embargo : A period in which data is not publicly available in JGI systems or outside …

… Our research focuses on the assembly of metagenomic sequence data into microbial genomes, which is of fundamental value … rapid processing and analysis of large amounts of genomic data. In particular we focus on the integration and comparison of thousands of metagenomic datasets, to enable our users to identify patterns and …

… offer new capabilities and resources to users through a BER data ecosystem.  A data ecosystem is a connected resource where data from different organizations is discoverable and … will be the development of tools and infrastructure for microbiome data science, and the development of new …

… Program combines large-scale, time-series metagenomic data with detailed characterization of model systems to … of biogeochemically-relevant pathways, enabling modeling of microbiomes based on functional traits. These advancements … activity, transcription regulation, and noncoding RNAs in microbiomes. The insights from this work have the potential …

… our understanding of the impacts of these viruses on microbiome processes is still limited. One key challenge is … and ultimately predict the main viral impacts in these microbiomes. … the range of virus-host interactions occurring in microbiomes, these omics data must be complemented with …

… eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, … coding potential to find novel functions that may impact microbiome structure and biogeochemical cycles. Research … to extract insights from large-scale biological datasets: Our group develops and applies artificial …

… Read more about our data management practices and the resources we provide. … Read our research integrity and data code of conduct. … Data Management at the JGI …

… The JGI supports the entire data life cycle — from experimental design to reuse. Armed with the high-quality data we generate, tools like artificial intelligence can … priorities:  The JGI is involved in efforts to integrate data in support of new research questions that span domains. …

… target is based on 98% of the total available hours.   FY 2025 DOE Metrics There were 2,627 unique* JGI users in FY2025 , which includes Principal Investigators (PIs), Co-PIs, … capabilities to analyze complex genomic or metagenomic datasets. [Download PDF] Q3 – Report on new computational …

… to extract meaningful biological insights from sequence data, employing IMG data and tools for comparative analysis, visualization and interpretation using public datasets.  … The Integrated Microbial Genomes & Microbiomes system ( IMG/M ) supports the annotation, …