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The JGI’s DNA Synthesis Program supports a wide range of projects, … supports researchers exploring how to convert sequence into functional assessments. The team has a research & … clade-specific orthology/paralogy relationships as well as insights into clade-specific novelties and expansions.  … …

Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and incredibly complex — making it … laboratories and plant biology courses across the globe for insights into reproductive, space and genome biology . The … through the OGG. For a long time, C-fern has served as a model for studying ferns and for teaching plant biology. It …

When submitting sequences to the JGI DNA Synthesis program, please … open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an open source …

… starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or …  The recent updates were approved by the DOE to address the DNA Synthesis program. When fully executed, the new User … User Agreement , JGI User Agreement for Federal Agencies , DNA Synthesis Appendix  and DNA Sequencing Appendix are …

The DNA Synthesis Science User Advisory Committee is chartered …

… discoveries and catalyzing a major transition of biology into data science.  Research in the Kyrpides group focuses … Neri U. et al. (2022) Expansion of the global RNA virome reveals diverse clades of bacteriophages. Cell . … Genes. Cell 178(5):1245-1259 Nayfach S, et al, (2019) New insights from uncultivated genomes of the global human gut …

Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA preparation.  JGI sample QC protocols …

BARONA-GOMEZ: I think that the very first thing that got us into this is that we should, in any case, use definitions … genome mining software we mentioned: “ EvoMining reveals the origin and fate of natural product biosynthetic … URI. “ The evolution of secondary metabolism – a unifying model” “ Natural products – a simple model to explain …

… collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global … learning algorithms for gene annotation and protein folding models, to improve the accuracy of functional predictions … communities affect plant growth and productivity. These insights have the potential to inform strategies that …

… the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on … Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and quality has been the … automated email once the samples are received and checked into our freezer.  Your project manager will keep you …

… that govern ecosystem processes. This research provides insights into microbial diversity and metabolic potential, with … metagenomic data with detailed characterization of model systems to explore the dynamics of microbial …