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… with others to develop healthier and more productive cacao plants and ensure there will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree that produces cacao … purposes on the latest version of the JGI plant portal Phytozome at  phytozome-next.JGI.doe.gov . One of the goals …

… improve the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is … Plant Flagship Genomes are selected through discussion with the JGI Plant … in plants and will accelerate gene discovery. BrachyPan on Phytozome (see Brachypodium Resources below) PennyPan on …

… for addressing key environmental challenges, such as improving soil health, carbon sequestration and bioeconomy … driven prioritization lists for laboratory isolation and genome sequencing of underexplored bacterial and archaeal … catalog : Beyond minimal draft and improved draft microbial genomes the program offers single-cell sequencing, …

… by viruses. Research in the viral genomics group aims at improving our collective understanding of ecological and … While an ever-increasing number of phage and virus genomes have been assembled and reported from metagenomes, our understanding of the impacts of these viruses …

… Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and … computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … and reconstruct metabolic properties encoded within those genomes. Our aim is to more fully capture microbial and …

… Genome to Enzymes and Pathways focuses on discovering and … vital to DOE missions. Using bioinformatics tools and genome portals, we study lignocellulose decomposition, CO2 … analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated …

… them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … advancing the bioeconomy, environmental sustainability, and improving bioenergy crops. …

… UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … favorite topic in, arguably, my area of expertise, which is genome mining. You’ll hear us talk about what it is, hear me … JGI paper that’s just come out where I got the chance to do genome mining on more than 50,000 genomes that we derived …

… Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. … for comprehensive access to information regarding genome and metagenome sequencing projects, and their associated metadata, … analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated …

… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … and characterizing microbial diversity, work in the Metagenome Program uses several experimental approaches to … The Metagenome Program focuses on the high-throughput sequencing of …

… JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version 13 will become the … website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  v13, which now hosts upwards of 250 plant genomes and has been under active development for over 5 …

… techniques and data analyses compile original data for improving fungal genomic resources empower students through isolation and genome sequencing of new fungal species.  Students collect … Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ …