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The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, environmental … and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the …

I don’t know how fast that comes. That could be a couple of decades away. But things are moving faster all the time. And … lineages of uncultivated genomes from the GEM catalog (in green) and previously existing reference genomes (in gray). Around the phylogenetic tree, …

… improve the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is … and environmental sustainability. … Plant Flagship Genomes are selected through discussion with the JGI Plant … datasets to further gene function research. The  Open Green Genomes (OGG) project seeks to develop comparative …

… driven prioritization lists for laboratory isolation and genome sequencing of underexplored bacterial and archaeal … Expansion of sequence space:  The JGI generates reference genomes from diverse bacterial and archaeal … based on their metagenome sequence, in the context of reference isolate genomes included from the IMG/M system. … …

… the DOE's vision for a sustainable, bio-based economy. … Genome to Enzymes and Pathways focuses on discovering and … vital to DOE missions. Using bioinformatics tools and genome portals, we study lignocellulose decomposition, CO2 … analysis and annotation of all publicly available genomes from three domains of life, in a uniquely integrated …

… as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host … al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG).  Nature Biotech .  37 , 29–37 Roux S, et …

The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … and characterizing microbial diversity, work in the Metagenome Program uses several experimental approaches to …

Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) … For counting: text file of gene counts (mapped against reference transcriptome or de novo assembly), DGE, alignment … Assembly, annotation ( IMG ) Depends on project Plant and Algal Standard Draft Whole genome shotgun sequencing. …

… in the early 2000s called Ecopia, which was a very early genome mining company, back when DNA sequencing of natural … We can also genetically manipulate them. We can do strain improvements. We can do all sorts of things. So that’s just … encyclopedia of enzymes at Aldridge that I could use to buy green uricase or “Wittig-ase” or whatever I was looking for. …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … compound that people know, as a family, it’s more than 7 decades. So, this family of substances is always associated … delivery mechanism. So, the polymer structure has specific preferences to cancer cell lines. So, that was introduced in …

… of secondary metabolites across bacteria, fungi, algae and plants. These molecules, which are not essential … of secondary metabolites produced by bacteria, fungi, algae and plants. These compounds are key to organisms' … factors and determine their binding sites across multiple genomes. Computational prediction of heterologous …

… the ever-changing demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to … based on their metagenome sequence, in the context of reference isolate genomes included from the IMG/M system. … …