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Data produced and released by the US Department of Energy … : A period in which data is not publicly available in JGI systems or outside repositories. Full access is granted to … portals (i.e. JGI Genome/Data Portal, MycoCosm, PhycoCosom, Phytozome, or IMG) and outside repositories (e.g. NCBI SRA …

To expand access to integrated data, improve tools and infrastructure as well as ensure cohesive data … environments. … KBase is a critical partner in enabling systems biology analyses, such as metabolic modeling, that …

… … Read more about our data management practices and the resources we provide. … Read our research integrity and data code of conduct. … Data Management at the JGI … JGI Scientist Code of Conduct … …

… technologies.  The exponential growth of DNA sequencing data, coupled with recent computational technology advances … in management, processing and visualization of “big data,” and artificial Intelligent/machine learning approaches in data analysis and interpretation is creating new …

The JGI has a strong interest in seeing that the data produced by the facility result in scientific … below) for the generation of sequence or metabolomic data, DNA synthesized, and any other contributions, such as … of publications and allowing connections between all systems to maximize the impact of user research. The crucial …

… works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, … advanced mass spectrometry techniques and computational tools, the program supports foundational research related to …

… understanding of plant diversity and integrating various data types to explore the molecular mechanisms behind phenotypic evolution. It also utilizes advanced tools, including deep learning algorithms for gene … biology to ecosystem processes through model laboratory ecosystems. They are small plastic growth chambers where plants …

… approaches to assess microbial activity across ecosystems.  By studying microbial communities and their … Program combines large-scale, time-series metagenomic data with detailed characterization of model systems to … evolution. The Program focuses on developing computational tools and visualization resources that support user analysis …

… the design and synthesis of complex genetic pathways and biosystems. It The program fosters collaboration with U.S. and … The DNA Synthesis Program aims to generate large datasets to explore sequence-function relationships, … innovative screening technologies and computational tools that enhance biofuel production and biosystem design. …

Our data platforms are a key resource for the broader scientific … unified access to all JGI genomic databases and analytical tools for all JGI sequencing projects. In 2021, the JGI … also encouraging community engagement and data exchange. … Phytozome is the JGI's Plant Comparative Genomics portal. …

… of Science through high performance computing (HPC) and data analysis.  The DOE Systems Biology Knowledgebase ( KBase ) integrates systems biology data and tools to help predict biological function.   To jointly …