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… our user community, comprising a broad range of researchers and trainees who use JGI resources and expertise. These … have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data life cycle, and embeds metadata and its curation in our …

… of secondary metabolites across bacteria, fungi, algae and plants. These molecules, which are not essential for … critical advantages to the organisms producing them, and are often involved in defense, nutrient acquisition and communication. Studying how these compounds are …

… four subgroups, adapted to different oceanic depths and relying on different ways of living. The Impact Microbes … cells of the uncultivated SAR324. The constellation of data gave the team unprecedented resolution to study the … also processed using the JGI-developed software suite, BBTools , and relying on the JGI Integrated Microbial Genomes …

… Natural Prodcast, a podcast about natural products and the science and scientists of secondary metabolism. … much I actually can learn just by really digging into the data and understanding what’s going on there. And now, … more into the meta genome mining. We started to build the tools for natural product researchers that easily can …

… Natural Prodcast, a podcast about natural products and the science and scientists of secondary metabolism. … now, just because of the ways that we can generate data. So, obviously, it’s very apparent to us here at the … little vague to me. What do you mean by putting a bunch of tools in one package? DAN UDWARY: Oh, sure. So if I wanted …

… Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi again, and … and I’m really excited about it. Because now we have the tools through genomics, and metabolomics, to ask these … for a company. Personally, that was my first taste of big data if you want, maybe it’s medium data now. But at the …

… from Lawrence Berkeley National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with … an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered … Resources Division (CRD), in order to create more useful tools for the bioinformatics community. Other work presented …

… Accepted proposals emphasize JGI interests in algae and secondary metabolites. A total of 27 proposals have … call recommended including plans to analyze and distribute data through the  DOE Systems Knowledgebase (KBase) , a … thousand Actinobacteria strains and then use computational tools to analyze biosynthetic gene clusters and then develop …

… training technologies provide opportunities for students and professors alike The Science In  PLoS Pathogens , a team … and skill development while curating reusable microbiome data. Undergraduate educators are partnering with the JGI … in parallel. While KBase does not currently have all the tools for complete processing and analysis of fungal data, …

… the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version 13 will become the current, and only, version … and there are now much more powerful and flexible tools available for building high performance user …

… who briefly shared their experiences below. Name: Noelle Anderson Class Year: At the time of the internship, 4th year … I got to work with an enormous set of fungal genomics data. For me, it was an opportunity to adapt my existing … the door for me in the sense that I learned many different tools in bioinformatics research. Also, it consolidated my …

… Trained on environmental data, a new JGI tool more accurately facilitates microbial … By leveraging massive user-generated datasets at the JGI and other publicly available data, GenomeOcean employs … — and primed for integration with artificial intelligence tools.  LLMs aren’t just for understanding the human …