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CSP Functional Genomics
… The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them translate … and ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily … and track record of the applicant.  Learn about the general review process or find details on the internal …
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Natural Prodcast Episode 18: A CSP Primer
… going to talk about JGI’s Community Science Program , or CSP, which is the main mechanism by which users work with … to find info about the CSP, FICUS, New Investigator and Functional Genomics calls. For my audience, all of these … I think for Natural Prodcast, I think the question that generally comes up that people come to me asking like is– …
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Environmental Genomics Group
… better understanding of microbial communities and ecosystem function.  The Environmental Genomics group also hosts the … of microbial ecology and metabolism by elucidating the functional potential of hard-to-culture microorganisms. This process enables our users to explore the genetic makeup of microbial communities, shedding light on …
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CSP Large Scale Call
… focused on genomic science projects that address biological functions for biomanufacturing, critical minerals and … For the CSP Large Scale call, a Letter of Intent (LOI) is required … and track record of the applicant.  Learn about the general review process or get details on the internal …
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CSP New Investigator Call
… The CSP New Investigator Call is for investigators and research … PIs cannot have been lead PI on any previously accepted JGI CSP or FICUS proposal.   Competitive projects will provide … a novel approach or form the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed …
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Examples: Successful LOIs & Submissions
… Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating … Elucidating Sphagnum microbiome genetic interactions for improved growth at elevated … strategies in a cosmopolitan and abundant soil bacterium: genetic microdiversity or core metabolic flexibility? …
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Viral Genomics Group
… Microbes drive critical ecosystem functions and affect global nutrient cycling, however they … prediction for uncultivated phages improved annotation and functional prediction for phage proteins user-friendly … Roux, S., Paul, B.G., Bagby, S.C. et al. (2021) Ecology and molecular targets of hypermutation in the …
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DOE Metrics
… target is based on 98% of the total available hours.   FY 2021 DOE Metrics There were 2,180 unique* JGI users in FY2021 , which includes Principal Investigators (PIs), Co-PIs, … Goal   Goal (hours)**   Actual Total   Actual % Goal   FY 2021 Total   250.0 467.195 187% 8,760 8,568 99.8% Q1 2021 …
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Microbiome Data Science Team
… include exploration of the global diversity of alternative genetic codes (Science 2014), unearthing hundreds of … Science 2017, Nature Microbiology 2018), discovery of new genes with important biotechnological applications (e.g., … of host-virus interactions, the exploration of the functional dark matter as well as the development of novel …
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User Programs
… the user and no granting of funds.    Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics JGI-TMF Critical Minerals and Materials …
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New Lineages of Life Group
… We then investigate the coding potential to find novel functions that may impact microbiome structure and … complexity, and encode for a treasure trove full of novel genes ready to be tapped for downstream applications. … microbes and eukaryotes and their impact on ecosystem function: We investigate the intricate networks of …
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Metabolomics Program
… metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables exploration of energy … with genomic data to gain insights into how small molecules function within plants, microbes, and ecosystems. … JGI scientists are able to link metabolic activity with gene expression, providing deeper insights into functional …
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