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CSP Large Scale Call
… critical minerals and materials, inter-organismal interactions, and predictive biology, modeling and biodesign … For the CSP Large Scale call, a Letter of Intent (LOI) is required …
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Microbial Program
… of terrestrial biogeochemical cycling and inter-organismal interactions. These insights are crucial for addressing key … drives sustainable solutions in energy, agriculture and ecosystem management. … terrestrial biogeochemical cycling and inter-organismal interactions, which are critical for advancing sustainable …
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Natural Prodcast Episode 18: A CSP Primer
… going to talk about JGI’s Community Science Program , or CSP, which is the main mechanism by which users work with … today. Mostly, I think it all comes to explaining what a CSP is, how you apply for and get one, and what happens once … a focus within BER anymore. We really focus on terrestrial ecosystems, but we work in coastal environments, brackish …
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Data Ecosystem
… new capabilities and resources to users through a BER data ecosystem.  A data ecosystem is a connected resource where data from different … NMDC, EMSL and the Protein Data Bank enables predictive ecosystem biology. The collaborations present exciting …
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CSP New Investigator Call
… The CSP New Investigator Call is for investigators and research … PIs cannot have been lead PI on any previously accepted JGI CSP or FICUS proposal.   Competitive projects will provide … a novel approach or form the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed …
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CSP Functional Genomics
… The CSP Functional Genomics call is to enable users to perform …
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Plant Microbial Interactions Group
… and associated viruses that all contribute to a dynamic ecosystem. We are interested in how plants self-organize, … fitness and health. This is a dynamic and complex ecosystem that includes bacteria, fungi, viruses. Resident … Plant / Bacteria / Viral Interactions …
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Environmental Genomics Group
… to a better understanding of microbial communities and ecosystem function.  The Environmental Genomics group also … genomes from metagenomes, we gain insights into microbial interactions, evolution, and adaptation, ultimately … metagenome combined assemblies (Hofmeyr et al. 2020) we are able to quantify isotope incorporation across a …
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Metagenome Program
… experimental approaches to assess microbial activity across ecosystems.  By studying microbial communities and their interactions, the Program aims to unlock the fundamental principles that govern ecosystem processes. This research provides insights into … sequencing of microbial communities to uncover the complex interactions and functions that shape ecosystems. By …
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Viral Genomics Group
… Microbes drive critical ecosystem functions and affect global nutrient cycling, … host cell take-over by viruses, and attempts to evaluate ecosystem-level impacts of viral infections. The Viral … group attempts to address this question in natural soil ecosystems by combining metagenomics with other omics …
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Examples: Successful LOIs & Submissions
… Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating … Elucidating Sphagnum microbiome genetic interactions for improved growth at elevated temperatures … networks governing terpenoid-mediated plant environment interactions to enable advanced bioenergy crops …
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Single Cell Research Group
… Kyrpides N. C., Woyke T . Giant virus diversity and host interactions through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., Leahy S. C., Attwood G. T., Teh K. H., … ., Ivanova N. N., Kelly W. J. Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection.” …
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