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… data science.  Research in the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. The … grand challenges in Biology, with a special focus on microbiome research.  These efforts include exploration of … (Nature Communications 2017, Science 2018, Molecular Cell 2019) and massive reconstruction of genomes from …

… going to talk about JGI’s Community Science Program , or CSP, which is the main mechanism by which users work with … today. Mostly, I think it all comes to explaining what a CSP is, how you apply for and get one, and what happens once … related to human health or creating vaccines, human gut microbiomes. We don’t do things related to human health. In …

… critical minerals and materials, inter-organismal interactions, and predictive biology, modeling and biodesign … For the CSP Large Scale call, a Letter of Intent (LOI) is required …

… Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating … Elucidating Sphagnum microbiome genetic interactions for improved growth at … strategies in a cosmopolitan and abundant soil bacterium: genetic microdiversity or core metabolic flexibility? …

… The CSP New Investigator Call is for investigators and research … PIs cannot have been lead PI on any previously accepted JGI CSP or FICUS proposal.   Competitive projects will provide … a novel approach or form the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed …

… The CSP Functional Genomics call is to enable users to perform …

… our understanding of the impacts of these viruses on microbiome processes is still limited. One key challenge is … and ultimately predict the main viral impacts in these microbiomes. … the range of virus-host interactions occurring in microbiomes, these omics data must be complemented with …

… along with their associated viruses and mobile genetic elements. Beyond exploring and characterizing … ecosystems.  By studying microbial communities and their interactions, the Program aims to unlock the fundamental … of biogeochemically-relevant pathways, enabling modeling of microbiomes based on functional traits. These advancements …

… This process enables our users to explore the genetic makeup of microbial communities, shedding light on … genomes from metagenomes, we gain insights into microbial interactions, evolution, and adaptation, ultimately … archaea across Earth’s biomes. Nat Microbiol 4 , 1895–1906 (2019). https://doi.org/10.1038/s41564-019-0510-x …

… the return-to-work plan in response to the pandemic.   FY 2019 Number of Unique Users There were 1,933 unique* JGI users in FY2019 , which includes Principal Investigators (PIs), Co-PIs, … Goal   Goal (hours)**   Actual Total   Actual % Goal   FY 2019 Total   242.0 326.490 134.9% 8,584 8,712 101.5% Q1 2019 …

… single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to better … Plant microbiomes hold the amazing ability to influence plant … 10.1073/pnas.1907500116 10.1016/j.celrep.2019.04.054 10.1371/journal.pbio.2002860 … Plant / Bacteria / Viral Interactions …

… as the DOE Systems Biology Knowledgebase and the National Microbiome Data Collective.    … DOE science mission areas of bioenergy and environmental microbiome processes.  Among the JGI’s largest dedicated … program in the DOE’s Office of Science. In December 2019, the JGI relocated to the Integrative Genomics Building …