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Metagenome Program
The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work encompasses bacteria, archaea, and … to assess microbial activity across ecosystems.  By studying microbial communities and their interactions, the …
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Science Programs
The JGI’s Science Programs offer support to users and their research … enhance the scientific impact of user projects, develop cutting edge approaches for and with users, and create computational tools and resources for them. Their concerted efforts …
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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in genomics and other … and catalyzing a major transition of biology into data science.  Research in the Kyrpides group focuses on … al. (2021) CheckV assesses the quality and completeness of metagenome-assembled viral genomes. Nature Biotechnol . …
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Community Science Program
The Community Science Program (CSP) provides the scientific community at large with access to high-throughput sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . Through this program, the DOE aims to advance …
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Science Stories
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User Science
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Single Cell Research Group
… genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic … ., Ivanova N. N., Kelly W. J. Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection.” … discovery of biomass-degrading genes and genomes from cow rumen. Science 331, 463-7 (2011). Newton I.L., Woyke T …
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DNA Synthesis Science User Advisory Committee
The DNA Synthesis Science User Advisory Committee is chartered by the Program … is chartered to render advice, guidance, and counsel on the effective management and strategic objectives of the … advisory panels and advocates of Program strategy, operations, and scientific relevance and quality. The Committee …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… about natural products and the science and scientists of secondary metabolism. Welcome back for our second season of … like, and then you could characterize it. The classical study that demonstrated this is Challis et al, Chemistry and … if an order is uncultured (blue; represented only by metagenome-assembled genomes or MAGs) or cultured (gray; …
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Natural Prodcast Episode 19: Bill Fenical
… … DAN UDWARY: Hey, everyone. I’ve got a great episode for you here today. We got the … kept looking for open jobs that said, we want a chemist to study the ocean. And I didn’t find a single job … processes with plants and animals, really, all over the world. We used ships. We used land-based marine labs. We …
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Natural Prodcast Episode 17: Cassandra Quave
… curator there, with a broad range of experimental work on plants for drug discovery in antibiotics, anticancer, and … And for the audience, ethnobotany is the scientific study of the ways that people interact with plants, whether it’s for plants to make clothing, or musical instruments, or food, or medicine, which was really where my …
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Mission
JGI Mission As a U.S. Department of Energy Office of Science user … biological and environmental systems. We optimize our service to the community through responsibly managing our … as a national user facility, and has grown to serve a worldwide community of more than 2,000 primary users—those …
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