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… learning to identify new divergent lineages and expand the Tree of Life. We then investigate the coding potential to … (2022) Giant virus biology and diversity in the era of genome-resolved metagenomics. Nature Reviews Microbiology … in cell biology. 25 (6), 339-346 Schulz et al. (2015) Marine amoebae with cytoplasmic and perinuclear symbionts …

UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … at some topic that I’m working with about now. I made a tree of different compounds, and I’d looked at it from an … quality. Yeah, for sure. NADINE ZIEMERT: Yeah, Dan… it’s a marine actinomycete bacterium. So they look kind of like …

The Fungal & Algal Program explores the vast diversity of fungi and algae … and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … to sequence 1000 fungal genomes from across the Fungal Tree of Life, from an international research team in …

UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast– a podcast about natural … of a particular part of the Streptomyces phylogenomic tree, then you will be in a position to say, this group of … it needs to be conserved, because it’s necessary for life in most cases. FRANCISCO BARONA-GOMEZ: In that …

… from candidate phyla, major branches in the phylogenetic tree without cultivated representatives. The “Great … Team    … Phylogenetic diversity estimates show that the gap between cultivated and uncultivated Bacteria and Archaea … in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … working with him.  We talk about his father, the legendary marine natural products chemist, Richard Moore, and get into seaweed, robots, algae, and biocatalysis — and he makes fun of me a lot, …

… “Adopt a Genome” is an informal program for faculty to “claim” the … designed for use by microbiologists to quickly bridge the gap from sequence to biological inference. … Genome … Berner, et. al.  2024.  Microbiology Resource Announcements 13 (10), e00517-24 Draft genome sequence of  Nitrobacter …

UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … bacterial and archaeal orders as seen on the phylogenetic tree, with new lineages of uncultivated genomes from the GEM … come from all kinds of disparate environments. There’s some marine. There’s some soil samples. There’s human gut …

… of Oceanography in San Diego. Bill is a pioneer of marine natural products, getting into the ocean and looking … new. And that is to begin to study the organic chemistry of life in the sea. And he looked at me and he said, you know, … So, this was when we started saying, we have to have the genomes. We have to look at the full picture of these. And …

And it actually was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that … like a nice summer day in Seattle I think this was like 2013 or 2014. And antiSMASH — I know you’ve interviewed Marnix … the community so far. But being here and then being at the Marine Natural Products meeting in Ventura where I got to …

… wouldn’t it be cool to look at these– it was actually marine invertebrates there– but look at these things in the … was really before– or kind of around about when the first genome sequencing was done. But natural products– marine … have a couple of projects in the lab that also work in microalgae as well. So it’s not just actinobacteria that we work …

… in the early 2000s called Ecopia, which was a very early genome mining company, back when DNA sequencing of natural … has to have a story. And it can be looking for drugs from marine organisms, in which case you get to go to exotic … So to me, to us, about 6 years ago, we thought the big gap in genome mining is not knowing if something is active …