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Calculating the Costs of Multiple Switchgrass Gene Copies
… have discovered that the candidate bioenergy feedstock switchgrass has adapted to expand its habitat range. But at … A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for … biofuel yield through a changing future. Switchgrass has multiple naturally occurring ploidy levels, called …
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Plant Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … and are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, … single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to better …
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Products
… Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of the product and … product audit to analyze the scientific value, demand, and costs of current offerings in the JGI product catalog. As a … assembled to less than 5kb in length, cloned into vector of choice Glycerol stock of sequence verified clone 102/NA …
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Natural Prodcast Episode 14: Nigel Mouncey
… DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took … my undergraduate in microbiology and then PhD in microbial genetics in the UK. And came across to the US for a couple … to create more product or you’ve been able to lower the costs.  DAN: Do you have any – or the ability to say, like, …
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required … Agreement and Appendix. An Appendix identifies the type of work or specific proposal to be covered under the …
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Frequently Asked Questions: Proposal Submission
… See below for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific … supported, sample/capacity limits, and instructions.  Many of the submissions are done using web-based forms.   To view …
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Plant Program
… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … a plant based bioeconomy where plants are a major source of chemical production and contribute to a healthier planet … The Plant Program advances our understanding of plants’ biological and ecological roles to foster …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … that will help solve energy and environmental challenges. Switchgrass is a native, shrubby grass that can grow … large polyploid genome, which means most genes are found as multiple copies across the chromosomes. In a follow-up study …
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Metabolomics Program
… The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the … metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables exploration of energy …
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FICUS
… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … the capabilities across at least two of the facilities, and generate datasets beyond what each of these facilities could … for the annual FICUS call with EMSL begin with a Letter of Intent (LOI) from a researcher, briefly describing the …
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Natural Prodcast Episode 11: Marnix Medema
… Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … and BiG-SLiCE, and now the BiG-FAM database of biosynthetic gene cluster families. And he tells us about forthcoming … encoded by them. Well, they had come out over actually multiple decades of time. But still to be able to use those …
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Exploring the Diversity of the American Prairie’s Switchgrass
… A tall native plant of the North American prairie, switchgrass ( Panicum virgatum ) has long been a tantalizing … traits — height, biomass, hardiness to cold, etc. — to its genes. The undertaking took shovels, trucks — and more than …
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