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With collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to … gene annotation and protein folding models, to improve the accuracy of functional predictions and speed up genome … and environmental sustainability. … Plant Flagship Genomes are selected through discussion with the JGI Plant …

The Plant Program Advisory Committee is chartered to offer … on the effective management and strategic objectives of the plant program. The committee serves as the program's key …

… curator there, with a broad range of experimental work on plants for drug discovery in antibiotics, anticancer, and … So these are some things that even if you’re not like a big pharma company and you’re just like an assistant … it’s not that easy. There are still not that many plant genomes, certainly nowhere close to bacterial kinds of …

I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As … in order to challenge or kill off competition, right? And plants do the same sorts of things. And then, bacteria often … mining. So we’re here in California. And gold mining was a big endeavor. And I’m no expert, but the way that I …

… and quality of finished product depend on genome. Selected genomes will be improved based on feasibility and scientific … annotation (single organism). Note: smRNA sequencing is no longer supported. For annotation: de novo assembly. For … contigs. Assembly, annotation ( IMG ) Depends on project Plant and Algal Standard Draft Whole genome shotgun …

Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics … advances in management, processing and visualization of “big data,” and artificial Intelligent/machine learning … 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science …

… common tools that genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and … and a tool for predicting natural product structures from genomes. And I was writing grants furiously to try to get … called “disease suppression”, where the microbiome of a plant, so the bacteria living on and inside the roots are …

… that all work performed in its User Facilities be covered by the User Agreement. … PMO: Frequently Asked Questions … … User Agreements … The PMO Team         Christa Pennacchio PMO Lead, Metabolomics Program Kerrie Barry Plant and Algal Genomics Natasha Brown Supply Chain Manager …

… they merged with Beecham and SmithKline and became a much bigger company. But, yeah, he was mucking around with … One is Spinosad. Its a natural fermentation product of Saccharopolispora spinoza . And the other is spinetoram which … with a contract manufacturer to actually have them build a plant for production and fermentation and transfer that …

… ranging conversation, and we could have gone on for a lot longer than we did, and I can say without reservation that … the JGI Secondary Metabolism Collaboratory , which is the big huge monster thing that’s been keeping me busy for a … schedule, I’m committing to it, and you all can hold me accountable and yell at me if I slip again. My JGI coworkers …

… and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … functioning — particularly in their roles associated with plants (mycorrhizae, endophytes, growth promoters, or … hundreds of diverse algal genomes, which will be made accessible through the PhycoCosm portal. The Fungal & Algal …

… means that scientists from all over the world bring us big problems related to energy and the environment – … the special, natural chemical compounds that you find in plants, fungi and bacteria, basically all living things. … a molecular biology term. We recorded the Primer as a much longer conversation, which I cut into more digestable …