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Metagenome Program
… encompasses bacteria, archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. … insights into microbial diversity and metabolic potential, with implications for energy production, environmental … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and …
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Environmental Genomics Group
… lineages, and reconstruct metabolic properties encoded within those genomes. Our aim is to more fully capture … isotopes from labeled nutrients into biomass. When paired with metagenomics, qSIP can decipher active microbial functions … effort to gain better understanding of complex ecosystems within hard to sequence and assemble samples, such as those …
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… Submit research proposals  here that integrate genomics with nanoscale science, accelerating discoveries and developing transformative bio-based … subsequent processing from that point. JGI provides users with various outputs free of charge, including data such as …
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Plant Program
… With collaborative user projects, the JGI’s Plant Program … role in capturing carbon, detoxifying soils, interacting with other organisms, and adapting to environmental changes. … sources and bolster agricultural resilience. The program’s discoveries support a plant based bioeconomy where plants …
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Accelerating Metagenomics Discoveries with Deep Learning
… Lab) and other institutions shared their works-in-progress with 86 participants in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA …
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New Lineages of Life Group
… viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to identify new divergent lineages and expand the … This work combines third generation sequencing and machine learning to enable fast, accurate identification. …
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Microbiome Data Science Team
… The exponential growth of DNA sequencing data, coupled with recent computational technology advances in management, … of “big data,” and artificial Intelligent/machine learning approaches in data analysis and interpretation is creating new opportunities for breakthrough discoveries and catalyzing a major transition of biology …
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JGI-TMF Critical Minerals and Materials Call
… program seeks research proposals that integrate genomics with nanoscale science, accelerating discoveries and developing transformative bio-based … order by the reviewers. The ranked proposal list, along with a recommendation from management at the JGI and the …
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Industry Engagement Program
… the public sector: academic and government institutions — with capabilities that had remained largely unknown and … Director Nigel Mouncey joined the JGI in 2017, he brought with him 20 years of industry experience — and an … will connect leading industry and academic organizations with the DOE, National Laboratories, and User Facilities — …
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Workforce Development & Education Outreach
… We offer internship opportunities through working directly with specific universities, continuing education programs in the Bay Area, and established programs affiliated with the Berkeley Lab A-LIFT team.    Overall, our aim is to … to explore opportunities in STEM by providing hands-on learning opportunities and ultimately, an understanding of …
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CalTeach
… program for undergraduate majors interested in developing a deep understanding of STEM teaching & learning. Their coursework focuses on STEM pedagogy, … theory and promoting diversity, equity, and inclusion, with concurrent field work in local classrooms and tutoring …
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Sequencing Technologies & Products
… the Sequencing Technologies team, relies on collaborations with Science Programs and Operations teams to enable the … uniquely offers quantitative Stable Isotope Probing (SIP) Metagenomics to the broader scientific community. The … microbiome activity levels. Learn more about SIP metagenomics through our Micro-Scale Applications group. …
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