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The exponential growth of DNA sequencing data, coupled with recent computational technology advances in management, … data science.  Research in the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. The … of data science in tackling grand challenges in Biology, with a special focus on microbiome research.  These efforts …

… candidate phyla, major branches in the phylogenetic tree without cultivated representatives. The “Great Plate-Count … ., Ivanova N. N., Kelly W. J. Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection.” Nat …

… expertise to support the global research community in studies of complex biological and environmental systems. We … DOE science mission areas of bioenergy and environmental microbiome processes.  Among the JGI’s largest dedicated … Integrative Genomics Building (IGB), a home it shares with the staff of the DOE Systems Biology Knowledgebase …

I really do want you all to hear this great conversation with Aaron Puri. He is an Assistant Professor from the … at the University of Washington in Seattle . And she studies bacteria that grow on one-carbon compounds like methanol and methane. And I really dove into microbial physiology and …

… encompasses bacteria, archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. … insights into microbial diversity and metabolic potential, with implications for energy production, environmental … of biogeochemically-relevant pathways, enabling modeling of microbiomes based on functional traits. These advancements …

… of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome … of high performance plants and microbes, and understanding microbiome interactions. The  insights derived are crucial … communities, and samples including state-of-the-art instrumentation and informatic approaches.By bridging genomics …

As always, you’ll find transcripts and show notes with links to lots of other resources, especially for these … Nature Biotechnology, titled ‘A genomic catalog of Earth’s microbiomes’ . (Citation: Nayfach S et al. A Genomic Catalog … seen in the past with people that have done metagenomic studies on, say, the human gut or whatever. But other than …

… coding potential to find novel functions that may impact microbiome structure and biogeochemical cycles. Research … Microbiome. 5 (1), 1-6 Schulz et al. (2017) Giant viruses with an expanded complement of translation system … Schulz et al. (2016) A Rickettsiales symbiont of amoebae with ancient features. Environmental Microbiology. 18 (8), …

… location at the IGB fosters team science and collaboration with partner organizations such as the DOE Systems Biology Knowledgebase and the National Microbiome Data Collective.        … Learn more about our …

… as well as ensure cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with NERSC and the DOE Energy Sciences Network (ESNet), the … will be the development of tools and infrastructure for microbiome data science, and the development of new …

… are NOT eligible for BERSS support through the JGI (with the exception of DE-FOA-0003453, which is eligible for … Proposals whose scope was not previously negotiated with the JGI will only be accepted pending available capacity, technical review and scope negotiation with the JGI.  Investigators with grants funded by DOE-BER …