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DNA Synthesis Program
The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the synthesis of … environmental challenges. Through innovative research in synthetic biology, the program enables the design and … and bioproducts. Efforts include developing innovative screening technologies and computational tools that enhance …
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Synthesis
… into functional assessments. This is done by synthesizing genes, pathways, and whole chromosomes for bioenergy, … and bioproduct applications.  The team has three subgroups: Synthetic Biology Lab : a user science group dedicated to … automations for DNA design, assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables …
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Publication Policy
… that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … acknowledgment (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any …
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Synthetic Biology Lab
The Synthetic Biology lab is divided into a DNA synthesis … as user facility that aims to provide access to state-of-the-art DNA synthesis and assembly technologies to the … by combining combinatorial synthesis, high-throughput screening methodologies, and statistical frameworks for …
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Institutional User Agreements
Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing … rights in technical data, project reporting to the DOE, and publication requirements. An official with authority is …
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Sequencing Submission Requirements for DNA Synthesis
… all constructs should be emailed to  Miranda Harmon-Smith, Synthetic Biology Project Manager . … How To Create an … written by M. Wayne Davis or commercial options include SnapGene . … How To Use ApE To save your ApE file as a Genbank … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …
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DNA Synthesis Science User Advisory Committee
The DNA Synthesis Science User Advisory Committee is chartered by … on the effective management and strategic objectives of the programs. The Committee serves as the Program's key … scientific relevance and quality. The Committee does not perform management functions nor do they direct the Programs’ …
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Synthetic Biology Informatics Group
Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  …
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Publications
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Natural Prodcast Episode 21: Elizabeth Parkinson
… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … sensing and its effects on regulation of natural product biosynthetic pathways, which led her to a successfully funded … probably, it'll take another year or two to get all the screening done with the molecules and the plasmids. DAN: …
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Natural Prodcast Episode 23: Aaron Puri
… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … stable isotopic labeling, an interesting way to explore biosynthetic chemistry. It’s some fun topics, and I think … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …
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Natural Prodcast Episode 11: Marnix Medema
… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … which is using DNA sequence to identify and interpret biosynthetic, secondary metabolism pathways. And today, we get … you to connect those heterogeneous types of data in a systematic way, where you can take large scale mass spec …
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