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The JGI’s Metabolomics Program works to uncover the roles of small … the program supports foundational research related to soil nutrient cycling and health, terrestrial biogeochemical … and computational analysis, JGI scientists are able to link metabolic activity with gene expression, providing deeper …

The JGI has a strong interest in seeing that the data produced by the facility result in scientific publications. JGI users and collaborators have the right to … comparative analysis, and interpretation of sequence, metabolomics, and functional genomics data types as well as …

Metabolomics strengthens -omics technologies at the JGI by identifying the actual molecules present in an environment that … they grow, as well as different types of environments (e.g. soil, lake).  A wide range of metabolites are identified …

Program offers users extensive genomics, DNA synthesis and metabolomics capabilities to identify, express and … cell free-based expression platforms, tools and data for deciphering regulatory networks, and refining experimental … of BGC size and complexity, BGC sequence composition, metabolic similarity & compatibility, and signatures of …

The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their … research provides insights into microbial diversity and metabolic potential, with implications for energy … and metatranscriptomics, to metagenomics and metabolomics data, shedding light on microbial metabolism …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis … with microeukaryotes, enhances our understanding of terrestrial biogeochemical cycling and inter-organismal … addressing key environmental challenges, such as improving soil health, carbon sequestration and bioeconomy …

… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s … the action of the microbiome because if you sterilize the soil, the protective effect is gone. You can transplant the … key component is data integration with genomics with metabolomics and with transcriptomics because I think we can …

To expand access to integrated data, improve tools and infrastructure as well as ensure cohesive data standards, … partner in enabling systems biology analyses, such as metabolic modeling, that go well beyond genome annotation …

… collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global … by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and adapting to … the ability to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of …

… could imagine if you have two colonies of bacteria in the soil or something and they’re competing with each other, if … like E. coli , and then being able to look using the metabolomics capabilities also at JGI — it’s really cool … up on previous Natural Prodcast episodes  here . Show Notes Publication: Suo Z et al. A Mesorhizobium japonicum quorum …