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With collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to … challenges by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and … and environmental sustainability. … Plant Flagship Genomes are selected through discussion with the JGI Plant …

The Plant Program Advisory Committee is chartered to offer advice, guidance and counsel on the effective management and strategic objectives of the plant program. The committee serves as the program's key …

… and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … functioning — particularly in their roles associated with plants (mycorrhizae, endophytes, growth promoters, or pathogens) and as the most efficient degraders of plant …

… curator there, with a broad range of experimental work on plants for drug discovery in antibiotics, anticancer, and … have almost nothing for. We’re also working on organisms, pathogenic fungi like Candida aureus in the lab and we work … it’s not that easy. There are still not that many plant genomes, certainly nowhere close to bacterial kinds of …

… about natural products and the science and scientists of secondary metabolism. Welcome back for our second season of … I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As … in order to challenge or kill off competition, right? And plants do the same sorts of things. And then, bacteria often …

PMO works with users, JGI scientists and technical staff to onboard users and guide them through the process of working … launching the user’s project. See below for details on each step. … Please review our FAQ in advance of … Pennacchio PMO Lead, Metabolomics Program Kerrie Barry Plant and Algal Genomics Natasha Brown Supply Chain Manager …

Plants are complex organisms that harbor a fantastic … associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a …

… and a tool for predicting natural product structures from genomes. And I was writing grants furiously to try to get … called “disease suppression”, where the microbiome of a plant, so the bacteria living on and inside the roots are protecting the plants against pathogens. So usually fungal or oomycete pathogens. In this …

… to do an independent study on ethnobotany of some of the plants that people were using for medicines in this very … almost never Actinomycetes. And so when we look at their genomes we don’t get the same kind of information that we … recently published papers was about doing this with human pathogens. And I had an undergrad in the lab who was just …

… in: DNA and RNA sequencing, Sample and library preparation, DNA synthesis and pathway engineering Mass spectrometry … and quality of finished product depend on genome. Selected genomes will be improved based on feasibility and scientific … contigs. Assembly, annotation ( IMG ) Depends on project Plant and Algal Standard Draft Whole genome shotgun …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for … data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The Integrated Microbial Genomes group is focused on:  Developing state-of-the-art …

… metabolites, genes, and proteins. It also enables exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With advanced mass … biogeochemical processes, development of high performance plants and microbes, and understanding microbiome …