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Fungal & Algal Program
… vast diversity of fungi and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the program … algal genomes, which will be made accessible through the PhycoCosm portal. The Fungal & Algal Program aims to …
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Fungal & Algal Program User Advisory Committee
The Fungal & Algal Program Advisory Committees is chartered by the … scientific relevance and quality. The Committee does not perform management functions nor does it direct the Programs’ …
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. … Understanding the genetic underpinnings responsible for these traits takes us closer to harnessing algae for …
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Frequently Asked Questions: Project Management
… (citation: https://doi.org/10.1093/nar/gkt1183 ) Algae: Phycocosm (citation: https://doi.org/10.1093/nar/gkaa898 ) … appropriate JGI Auspice Statement to acknowledge the work done by the JGI. More information is available in our … done for my project? … What JGI-related meetings or workshops are available to me? …
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. … Understanding the genetic underpinnings responsible for these traits takes us closer to harnessing algae for …
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Natural Prodcast Episode 7: Ben Shen
… of secondary metabolism.  DAN: Hello, and welcome back for Episode 7 of the Natural Prodcast. It’s been about a … for a while. Moving forward, I’m hoping to get a new one out every two weeks. This time, we’ve got a great … general. DAN: All right, that sounds like a great place to stop. So Ben, thank you so much for talking with us today. …
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Natural Prodcast Episode 15: Katherine Duncan
So I always liked science in school. I wouldn’t say I was one of these people that wants to study oceanography and was … make your farmed salmon pink so that you buy that in the shop. And then there’s some kind of freeze-dried microalgae … era, we need new chemistry. If we want to stop finding stuff that we’ve found, or finding stuff that’s …
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Analyze Data
Chief Informatics Officer …
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Products
… to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will … small genes assembled to less than 5kb in length, cloned into vector of choice Glycerol stock of sequence … projects. Assembly, annotation for ( Phytozome for plant, Phycocosm for algae) depends on genome Plant and Algal …
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JGI Portals
Our data platforms are a key resource for the broader scientific … in a uniquely integrated context. IMG/M provides tools for analyzing the functional capability of microbial communities … analyses of fungi and community annotation. … Phycocosm is a comprehensive resource hub that provides …
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Natural Prodcast Episode 20: Brian Bachmann
… … DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. … I wanted to tell you about in this introduction. First and foremost, our interview this week is with Professor Brian … cluster per week. And that really got me excited. And I stopped thinking about doing a postdoc and went to industry …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… and scientists of secondary metabolism. Welcome back for our second season of Natural Prodcast. This first … I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As … what genome mining is, if I want to explain that to someone who doesn’t know much about genetics or anything else, …
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