The User Support Analysis group provides computational analysis for new technology development and JGI user science projects. We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product types, to the development of automated analysis pipelines for standard sequencing products performed at scale.
Our group also performs ‘proof-of principle’ research projects to demonstrate new genomic capabilities. Recent projects include analysis of the epigenomic landscape of bacteria (collaboration with PacBio and New England Biolabs), large scale annotation of gene function in Bacteria (collaboration with Deutschbauer group at LBNL), and engineering novel strains of phosphate-hydrolyzing plant root-associated bacteria (Collaboration with JGI DNA synthesis group).
More about Matt
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