2024
(2024) ContScout: sensitive detection and removal of contamination from annotated genomes.
Nature Communications 15(1), 936.
10.1038/s41467-024-45024-5
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(2024) Oxygenation influences xylose fermentation and gene expression in the yeast genera Spathaspora and Scheffersomyces.
Biotechnology for Biofuels and Bioproducts 17(1), 20.
10.1186/s13068-024-02467-8
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(2024) Genome sequencing of Porostereum spadiceum to study the degradation of levofloxacin.
Ecotoxicology and Environmental Safety 270, 115808.
10.1016/j.ecoenv.2023.115808
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(2024) On the origin of bird’s nest fungi: Phylogenomic analyses of fungi in the Nidulariaceae (Agaricales, Basidiomycota).
Molecular Phylogenetics and Evolution 193, 108010.
10.1016/j.ympev.2024.108010
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(2024) Populus MYC2 orchestrates root transcriptional reprogramming of defence pathway to impair Laccaria bicolor ectomycorrhizal development.
New Phytologist 242(2), 658-674.
10.1111/nph.19609
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(2024) Multilevel analysis between Physcomitrium patens and Mortierellaceae endophytes explores potential long‐standing interaction among land plants and fungi.
The Plant Journal 118(2), 304-323.
10.1111/tpj.16605
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(2024) Draft genome sequencing and assembly of Favolaschia claudopus CIRM-BRFM 2984 isolated from oak limbs.
Journal of Genomics 12, 44-46.
10.7150/jgen.92255
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(2024) Potential for functional divergence in ectomycorrhizal fungal communities across a precipitation gradient.
ISME Communications 4(1), ycae031.
10.1093/ismeco/ycae031
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(2024) Transcriptional response of the white-rot fungus Dichomitus squalens to polysaccharides reveals a co-expression network of plant biomass conversion related genes.
Current Research in Biotechnology 7, 100198.
10.1016/j.crbiot.2024.100198
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2023
(2023) Two major chromosome evolution events with unrivaled conserved gene content in pomegranate.
Frontiers in Plant Science 14, 1039211.
10.3389/fpls.2023.1039211
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(2023) Convergent reductive evolution and host adaptation in Mycoavidus bacterial endosymbionts of Mortierellaceae fungi.
Fungal Genetics and Biology 169, 103838.
10.1016/j.fgb.2023.103838
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(2023) Metatranscriptomics sheds light on the links between the functional traits of fungal guilds and ecological processes in forest soil ecosystems.
New Phytologist .
10.1111/nph.19471
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(2023) Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes..
Nucleic Acids Research 51(W1), w108-w114.
10.1093/nar/gkad385
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(2023) High-quality RNA extraction and the regulation of genes encoding cellulosomes are correlated with growth stage in anaerobic fungi.
Frontiers in Fungal Biology 4, 1171100.
10.3389/ffunb.2023.1171100
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(2023) Characterization of a novel polyextremotolerant fungus, Exophiala viscosa, with insights into its melanin regulation and ecological niche..
G3: Genes, Genomes, Genetics .
10.1093/g3journal/jkad110
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(2023) Ploidy evolution in a wild yeast is linked to an interaction between cell type and metabolism.
PLOS Biology 21(11), e3001909.
10.1371/journal.pbio.3001909
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(2023) Ploidy evolution in a wild yeast is linked to an interaction between cell type and metabolism.
PLOS Biology 21(11), e3001909.
10.1371/journal.pbio.3001909
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(2023) Ploidy evolution in a wild yeast is linked to an interaction between cell type and metabolism.
PLOS Biology 21(11), e3001909.
10.1371/journal.pbio.3001909
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(2023) Trichoderma harzianum transcriptome in response to the nematode Pratylenchus brachyurus.
Biological Control 183, 105245.
10.1016/j.biocontrol.2023.105245
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(2023) A scaffolded and annotated reference genome of giant kelp (Macrocystis pyrifera).
BMC Genomics 24(1), 543.
10.1186/s12864-023-09658-x
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(2023) Large-scale genomic analyses with machine learning uncover predictive patterns associated with fungal phytopathogenic lifestyles and traits.
Scientific Reports 13(1), 17203.
10.1038/s41598-023-44005-w
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(2023) Large-scale genomic analyses with machine learning uncover predictive patterns associated with fungal phytopathogenic lifestyles and traits.
Scientific Reports 13(1), 17203.
10.1038/s41598-023-44005-w
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(2023) Large-scale genomic analyses with machine learning uncover predictive patterns associated with fungal phytopathogenic lifestyles and traits.
Scientific Reports 13(1), 17203.
10.1038/s41598-023-44005-w
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(2023) Dataset of 143 metagenome-assembled genomes from the Arctic and Atlantic Oceans, including 21 for eukaryotic organisms.
Data in Brief 47, 108990.
10.1016/j.dib.2023.108990
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(2023) A thousand-genome panel retraces the global spread and adaptation of a major fungal crop pathogen.
Nature Communications 14(1), 1059.
10.1038/s41467-023-36674-y
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(2023) Sequencing the Genomes of the First Terrestrial Fungal Lineages: What Have We Learned?.
Microorganisms 11(7), 1830.
10.3390/microorganisms11071830
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(2023) A Remarkable Expansion of Oligopeptide Transporter Genes in Rust Fungi (Pucciniales) Suggests a Specialization in Nutrient Acquisition for Obligate Biotrophy..
Phytopathology 113(2), 252-264.
10.1094/phyto-04-22-0128-r
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(2023) Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi.
Nature Communications 14(1), 1835.
10.1038/s41467-023-37551-4
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(2023) An HMM approach expands the landscape of sesquiterpene cyclases across the kingdom Fungi.
Microbial Genomics 9(4), mgen000990.
10.1099/mgen.0.000990
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(2023) T-Toxin Virulence Genes: Unconnected Dots in a Sea of Repeats.
mBio 14(2), e00261-23.
10.1128/mbio.00261-23
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(2023) Genome-scale phylogeny and comparative genomics of the fungal order Sordariales.
Molecular Phylogenetics and Evolution 189, 107938.
10.1016/j.ympev.2023.107938
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(2023) Genome-scale phylogeny and comparative genomics of the fungal order Sordariales.
Molecular Phylogenetics and Evolution 189, 107938.
10.1016/j.ympev.2023.107938
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(2023) Genome-scale phylogeny and comparative genomics of the fungal order Sordariales.
Molecular Phylogenetics and Evolution 189, 107938.
10.1016/j.ympev.2023.107938
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(2023) A Genetic Engineering Toolbox for the Lignocellulolytic Anaerobic Gut Fungus Neocallimastix frontalis.
ACS Synthetic Biology 12(4), 1034-1045.
10.1021/acssynbio.2c00502
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(2023) Draft genome sequence of Yarrowia lipolytica NRRL Y-64008, an oleaginous yeast capable of growing on lignocellulosic hydrolysates.
Microbiology Resource Announcements 12(12), e00435-23.
10.1128/mra.00435-23
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(2023) Near-complete genome sequence of Lipomyces tetrasporous NRRL Y-64009, an oleaginous yeast capable of growing on lignocellulosic hydrolysates.
Microbiology Resource Announcements 12(11), e00426-23.
10.1128/mra.00426-23
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(2023) Draft genome sequence of Yarrowia lipolytica NRRL Y-64008, an oleaginous yeast capable of growing on lignocellulosic hydrolysates.
Microbiology Resource Announcements 12(12), e00435-23.
10.1128/mra.00435-23
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(2023) Near-complete genome sequence of Lipomyces tetrasporous NRRL Y-64009, an oleaginous yeast capable of growing on lignocellulosic hydrolysates.
Microbiology Resource Announcements 12(11), e00426-23.
10.1128/mra.00426-23
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(2023) Draft genome sequence of Yarrowia lipolytica NRRL Y-64008, an oleaginous yeast capable of growing on lignocellulosic hydrolysates.
Microbiology Resource Announcements 12(12), e00435-23.
10.1128/mra.00435-23
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(2023) Near-complete genome sequence of Lipomyces tetrasporous NRRL Y-64009, an oleaginous yeast capable of growing on lignocellulosic hydrolysates.
Microbiology Resource Announcements 12(11), e00426-23.
10.1128/mra.00426-23
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(2023) Genomic determination of breeding systems and trans-specific evolution of HD MAT genes in suilloid fungi..
Genetics 224(2).
10.1093/genetics/iyad069
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(2023) The transcriptional activator ClrB is crucial for the degradation of soybean hulls and guar gum in Aspergillus niger.
Fungal Genetics and Biology 165, 103781.
10.1016/j.fgb.2023.103781
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(2023) The Amylolytic Regulator AmyR of Aspergillus niger Is Involved in Sucrose and Inulin Utilization in a Culture-Condition-Dependent Manner.
Journal of Fungi 9(4), 438.
10.3390/jof9040438
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(2023) Lignin deconstruction by anaerobic fungi.
Nature Microbiology 8(4), 596-610.
10.1038/s41564-023-01336-8
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(2023) A telomere-to-telomere genome assembly resource of Bipolaris sorokiniana, the fungal pathogen causing spot blotch and common root rot diseases in barley and wheat.
PhytoFrontiers™ .
10.1094/phytofr-08-23-0108-a
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(2023) Comparative Genomics and Transcriptomics Analyses Reveal Divergent Plant Biomass-Degrading Strategies in Fungi.
Journal of Fungi 9(8), 860.
10.3390/jof9080860
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(2023) Plasmid Copy Number Engineering Accelerates Fungal Polyketide Discovery upon Unnatural Polyketide Biosynthesis.
ACS Synthetic Biology 12(8), 2226-2235.
10.1021/acssynbio.3c00178
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(2023) Comparative genomics of Mollicutes-related endobacteria supports a late invasion into Mucoromycota fungi.
Communications Biology 6(1), 948.
10.1038/s42003-023-05299-8
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(2023) Functional genomics gives new insights into the ectomycorrhizal degradation of chitin.
New Phytologist 238(2), 845-858.
10.1111/nph.18773
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(2023) Spray‐induced gene silencing to identify powdery mildew gene targets and processes for powdery mildew control.
Molecular Plant Pathology .
10.1111/mpp.13361
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(2023) Transcriptomics of Temporal- versus Substrate-Specific Wood Decay in the Brown-Rot Fungus Fibroporia radiculosa.
Journal of Fungi 9(10), 1029.
10.3390/jof9101029
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(2023) Transcriptomics of Temporal- versus Substrate-Specific Wood Decay in the Brown-Rot Fungus Fibroporia radiculosa.
Journal of Fungi 9(10), 1029.
10.3390/jof9101029
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(2023) Transcriptomics of Temporal- versus Substrate-Specific Wood Decay in the Brown-Rot Fungus Fibroporia radiculosa.
Journal of Fungi 9(10), 1029.
10.3390/jof9101029
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(2023) Speciation Underpinned by Unexpected Molecular Diversity in the Mycorrhizal Fungal Genus Pisolithus.
Molecular Biology and Evolution 40(3), msad045.
10.1093/molbev/msad045
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(2023) Mycoparasites, Gut Dwellers, and Saprotrophs: Phylogenomic Reconstructions and Comparative Analyses of Kickxellomycotina Fungi.
Genome Biology and Evolution 15(1), evac185.
10.1093/gbe/evac185
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(2023) Terabase-Scale Coassembly of a Tropical Soil Microbiome.
Microbiology Spectrum , e00200-23.
10.1128/spectrum.00200-23
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(2023) Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria.
Nature Microbiology 8(9), 1668-1681.
10.1038/s41564-023-01448-1
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(2023) Deciphering the molecular components of the quorum sensing system in the fungus Ophiostoma piceae.
Microbiology Spectrum 11(6), e00290-23.
10.1128/spectrum.00290-23
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(2023) Deciphering the molecular components of the quorum sensing system in the fungus Ophiostoma piceae.
Microbiology Spectrum 11(6), e00290-23.
10.1128/spectrum.00290-23
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(2023) Deciphering the molecular components of the quorum sensing system in the fungus Ophiostoma piceae.
Microbiology Spectrum 11(6), e00290-23.
10.1128/spectrum.00290-23
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(2023) A global phylogenomic analysis of the shiitake genus Lentinula.
Proceedings of the National Academy of Sciences of the United States of America 120(10), e2214076120.
10.1073/pnas.2214076120
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(2023) Biosynthesis of Haloterpenoids in Red Algae via Microbial-like Type I Terpene Synthases.
ACS Chemical Biology 19(1), 185-192.
10.1021/acschembio.3c00627
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(2023) Biosynthesis of Haloterpenoids in Red Algae via Microbial-like Type I Terpene Synthases.
ACS Chemical Biology 19(1), 185-192.
10.1021/acschembio.3c00627
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(2023) Biosynthesis of Haloterpenoids in Red Algae via Microbial-like Type I Terpene Synthases.
ACS Chemical Biology 19(1), 185-192.
10.1021/acschembio.3c00627
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(2023) Acquisition of host-derived carbon in biomass of the ectomycorrhizal fungus Pisolithus microcarpus is correlated to fungal carbon demand and plant defences.
FEMS Microbiology Ecology 99(5), fiad037.
10.1093/femsec/fiad037
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(2023) DNA hypomethylation of the host tree impairs interaction with mutualistic ectomycorrhizal fungus.
New Phytologist 238(6), 2561-2577.
10.1111/nph.18734
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(2023) IMA genome-F18.
IMA Fungus 14(1), 21.
10.1186/s43008-023-00121-w
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(2023) IMA genome-F18.
IMA Fungus 14(1), 21.
10.1186/s43008-023-00121-w
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(2023) IMA genome-F18.
IMA Fungus 14(1), 21.
10.1186/s43008-023-00121-w
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(2023) Stepwise recombination suppression around the mating-type locus in an ascomycete fungus with self-fertile spores.
PLOS Genetics 19(2), e1010347.
10.1371/journal.pgen.1010347
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(2023) Divergent Evolution of Early Terrestrial Fungi Reveals the Evolution of Mucormycosis Pathogenicity Factors.
Genome Biology and Evolution 15(4), evad046.
10.1093/gbe/evad046
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(2023) Genetic and Structural Diversity of Prokaryotic Ice-Binding Proteins from the Central Arctic Ocean.
Genes 14(2), 363.
10.3390/genes14020363
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(2023) Local-scale panmixia in the lichenized fungus Xanthoria parietina contrasts with substantial genetic structure in its Trebouxia photobionts.
The Lichenologist 55(2), 69-79.
10.1017/s002428292300004x
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(2023) Genome-wide prediction and transcriptome analysis of sugar transporters in four ascomycete fungi.
Bioresource Technology 391(Pt B), 130006.
10.1016/j.biortech.2023.130006
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(2023) Genome-wide prediction and transcriptome analysis of sugar transporters in four ascomycete fungi.
Bioresource Technology 391(Pt B), 130006.
10.1016/j.biortech.2023.130006
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(2023) Genome-wide prediction and transcriptome analysis of sugar transporters in four ascomycete fungi.
Bioresource Technology 391(Pt B), 130006.
10.1016/j.biortech.2023.130006
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(2023) Altered Expression of Two Small Secreted Proteins (ssp4 and ssp6) Affects the Degradation of a Natural Lignocellulosic Substrate by Pleurotus ostreatus.
International Journal of Molecular Sciences 24(23), 16828.
10.3390/ijms242316828
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(2023) Altered Expression of Two Small Secreted Proteins (ssp4 and ssp6) Affects the Degradation of a Natural Lignocellulosic Substrate by Pleurotus ostreatus.
International Journal of Molecular Sciences 24(23), 16828.
10.3390/ijms242316828
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(2023) Altered Expression of Two Small Secreted Proteins (ssp4 and ssp6) Affects the Degradation of a Natural Lignocellulosic Substrate by Pleurotus ostreatus.
International Journal of Molecular Sciences 24(23), 16828.
10.3390/ijms242316828
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(2023) Conservation and Expansion of Transcriptional Factor Repertoire in the Fusarium oxysporum Species Complex.
Journal of Fungi 9(3), 359.
10.3390/jof9030359
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(2023) Transcriptomic and genomic effects of gamma-radiation exposure on strains of the black yeast Exophiala dermatitidis evolved to display increased ionizing radiation resistance.
Microbiology Spectrum , e02219-23.
10.1128/spectrum.02219-23
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(2023) Ectomycorrhizal fungi enhance pine growth by stimulating iron‐dependent mechanisms with trade‐offs in symbiotic performance.
New Phytologist .
10.1111/nph.19449
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(2023) Ectomycorrhizal fungi enhance pine growth by stimulating iron‐dependent mechanisms with trade‐offs in symbiotic performance.
New Phytologist .
10.1111/nph.19449
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(2023) Ectomycorrhizal fungi enhance pine growth by stimulating iron‐dependent mechanisms with trade‐offs in symbiotic performance.
New Phytologist .
10.1111/nph.19449
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(2023) Moderate high temperature is beneficial or detrimental depending on carbon availability in the green alga Chlamydomonas reinhardtii.
Journal of Experimental Botany , erad405.
10.1093/jxb/erad405
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(2023) Moderate high temperature is beneficial or detrimental depending on carbon availability in the green alga Chlamydomonas reinhardtii.
Journal of Experimental Botany , erad405.
10.1093/jxb/erad405
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(2023) Moderate high temperature is beneficial or detrimental depending on carbon availability in the green alga Chlamydomonas reinhardtii.
Journal of Experimental Botany , erad405.
10.1093/jxb/erad405
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2022
(2022) MycoCosm, the JGI’s Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses.
2605, 271-291.
10.1007/978-1-0716-2871-3_14
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(2022) Diploid-dominant life cycles characterize the early evolution of Fungi.
Proceedings of the National Academy of Sciences of the United States of America 119(36), e2116841119.
10.1073/pnas.2116841119
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(2022) Engineering of holocellulase in biomass-degrading fungi for sustainable biofuel production.
Journal of Cleaner Production 371, 133488.
10.1016/j.jclepro.2022.133488
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(2022) Development of PCR-based markers for the identification and detection of Lophodermella needle cast pathogens on Pinus contorta var. latifolia and P. flexilis.
Journal of Microbiological Methods 200, 106546.
10.1016/j.mimet.2022.106546
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(2022) Transitions of foliar mycobiota community and transcriptome in response to pathogenic conifer needle interactions.
Scientific Reports 12(1), 7832.
10.1038/s41598-022-11907-0
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(2022) Phenotype to genotype in Neurospora crassa: Association of the scumbo phenotype with mutations in the gene encoding ceramide C9-methyltransferase.
Current Research in Microbial Sciences 3, 100117.
10.1016/j.crmicr.2022.100117
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(2022) Co‑cultivation of anaerobic fungi with Clostridium acetobutylicum bolsters butyrate and butanol production from cellulose and lignocellulose.
Journal of Industrial Microbiology & Biotechnology 49(6), kuac024.
10.1093/jimb/kuac024
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(2022) Enemy or ally: a genomic approach to elucidate the lifestyle of Phyllosticta citrichinaensis.
G3: Genes, Genomes, Genetics 12(5), jkac061.
10.1093/g3journal/jkac061
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(2022) Enemy or ally: a genomic approach to elucidate the lifestyle of Phyllosticta citrichinaensis.
G3: Genes, Genomes, Genetics 12(5), jkac061.
10.1093/g3journal/jkac061
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(2022) Multi-omics profiling of the cold tolerant Monoraphidium minutum 26B-AM in response to abiotic stress.
Algal Research 66, 102794.
10.1016/j.algal.2022.102794
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(2022) Evolution of zygomycete secretomes and the origins of terrestrial fungal ecologies.
iScience 25(8), 104840.
10.1016/j.isci.2022.104840
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(2022) Detailed analysis of the D-galactose catabolic pathways in Aspergillus niger reveals complexity at both metabolic and regulatory level.
Fungal Genetics and Biology 159, 103670.
10.1016/j.fgb.2022.103670
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(2022) Protocol for single-cell isolation and genome amplification of environmental microbial eukaryotes for genomic analysis.
STAR Protocols 3(1), 100968.
10.1016/j.xpro.2021.100968
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(2022) Evidence of Asexual Overwintering of Melampsora paradoxa and Mapping of Stem Rust Host Resistance in Salix.
Plants 11(18), 2385.
10.3390/plants11182385
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(2022) Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans.
Microbiome 10(1), 67.
10.1186/s40168-022-01254-7
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(2022) Tissue Cultivation, Preparation, and Extraction of High Molecular Weight DNA for Single-Molecule Genome Sequencing of Plant-Associated Fungi.
2605, 79-102.
10.1007/978-1-0716-2871-3_5
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(2022) Salinity tolerance mechanisms of an Arctic Pelagophyte using comparative transcriptomic and gene expression analysis.
Communications Biology 5(1), 500.
10.1038/s42003-022-03461-2
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(2022) Unraveling the regulation of sugar beet pulp utilization in the industrially relevant fungus Aspergillus niger.
iScience 25(4), 104065.
10.1016/j.isci.2022.104065
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(2022) Sequencing and Analysis of the Entire Genome of the Mycoparasitic Bioeffector Fungus Trichoderma asperelloides Strain T 203 (Hypocreales).
Microbiology Resource Announcements 11(2), e00995-21.
10.1128/mra.00995-21
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(2022) Near-Complete Genome Sequence of Zygosaccharomyces rouxii NRRL Y-64007, a Yeast Capable of Growing on Lignocellulosic Hydrolysates.
Microbiology Resource Announcements 11(5), e00050-22.
10.1128/mra.00050-22
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(2022) High-quality genome of the basidiomycete yeast Dioszegia hungarica PDD-24b-2 isolated from cloud water.
G3: Genes, Genomes, Genetics 12(12), jkac282.
10.1093/g3journal/jkac282
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(2022) An amoeba and a cyanobacterium walk into a bar....
Nature Reviews Microbiology 20(9), 511-511.
10.1038/s41579-022-00775-0
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(2022) High-Quality Draft Nuclear and Mitochondrial Genome Sequence of Fusarium oxysporum f. sp. albedinis strain 9, the Causal Agent of Bayoud Disease on Date Palm..
Plant Disease 106(7), 1974-1976.
10.1094/pdis-01-22-0245-a
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(2022) Comparative genomics reveals a dynamic genome evolution in the ectomycorrhizal milk‐cap (Lactarius) mushrooms.
New Phytologist 235(1), 306-319.
10.1111/nph.18143
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(2022) The Earth BioGenome Project 2020: Starting the clock.
Proceedings of the National Academy of Sciences of the United States of America 119(4), e2115635118.
10.1073/pnas.2115635118
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(2022) The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum.
Journal of Fungi 8(12), 1315.
10.3390/jof8121315
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(2022) Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom‐forming fungi.
New Phytologist 233(5), 2294-2309.
10.1111/nph.17892
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(2022) Annotation survey and life cycle transcriptomics of transcription factors in rust fungi (Pucciniales) identify a possible role for cold shock proteins in dormancy exit.
Fungal Genetics and Biology 161, 103698.
10.1016/j.fgb.2022.103698
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(2022) Identifying the gluc-1 and gluc-2 mutations in Neurospora crassa by genome resequencing.
Journal of Genetics 101(2), 50.
10.1007/s12041-022-01394-7
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(2022) GalR, GalX and AraR co‐regulate d‐galactose and l‐arabinose utilization in Aspergillus nidulans.
Microbial Biotechnology 15(6), 1839-1851.
10.1111/1751-7915.14025
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(2022) Multiomics in the central Arctic Ocean for benchmarking biodiversity change.
PLOS Biology 20(10), e3001835.
10.1371/journal.pbio.3001835
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(2022) Wildfire-dependent changes in soil microbiome diversity and function.
Nature Microbiology 7(9), 1419-1430.
10.1038/s41564-022-01203-y
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(2022) Genome Sequence and Analysis of the Flavinogenic Yeast Candida membranifaciens IST 626.
Journal of Fungi 8(3), 254.
10.3390/jof8030254
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(2022) Coevolution of the Ess1-CTD axis in polar fungi suggests a role for phase separation in cold tolerance.
Science Advances 8(36), eabq3235.
10.1126/sciadv.abq3235
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(2022) Itaconic acid production is regulated by LaeA in Aspergillus pseudoterreus.
Metabolic Engineering Communications 15, e00203.
10.1016/j.mec.2022.e00203
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(2022) Proteome of the Wood Decay Fungus Fomitopsis pinicola Is Altered by Substrate.
Microbiology Resource Announcements 11(9), e00586-22.
10.1128/mra.00586-22
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(2022) Population genomics of a forest fungus reveals high gene flow and climate adaptation signatures.
Molecular Ecology 31(7), 1963-1979.
10.1111/mec.16369
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(2022) Diversity of genomic adaptations to the post‐fire environment in Pezizales fungi points to crosstalk between charcoal tolerance and sexual development.
New Phytologist 236(3), 1154-1167.
10.1111/nph.18407
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(2022) An optimized ChIP‐Seq framework for profiling histone modifications in Chromochloris zofingiensis.
Plant Direct 6(3), e392.
10.1002/pld3.392
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(2022) Phylogenomics and Comparative Genomics Highlight Specific Genetic Features in Ganoderma Species.
Journal of Fungi 8(3), 311.
10.3390/jof8030311
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(2022) Gene Coexpression Connectivity Predicts Gene Targets Underlying High Ionic-Liquid Tolerance in Yarrowia lipolytica.
mSystems 7(4), e00348-22.
10.1128/msystems.00348-22
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(2022) Kingdom-Wide Analysis of Fungal Transcriptomes and tRNAs Reveals Conserved Patterns of Adaptive Evolution.
Molecular Biology and Evolution 39(2), msab372-.
10.1093/molbev/msab372
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(2022) The ectomycorrhizal fungus Pisolithus microcarpus encodes a microRNA involved in cross-kingdom gene silencing during symbiosis.
Proceedings of the National Academy of Sciences of the United States of America 119(3), e2103527119.
10.1073/pnas.2103527119
More Details
(2022) The role of zinc in the adaptive evolution of polar phytoplankton.
Nature Ecology & Evolution 6(7), 965-978.
10.1038/s41559-022-01750-x
More Details
(2022) Systems-wide analysis revealed shared and unique responses to moderate and acute high temperatures in the green alga Chlamydomonas reinhardtii.
Communications Biology 5(1), 460.
10.1038/s42003-022-03359-z
More Details
2021
(2021) The leucine-rich repeats in allelic barley MLA immune receptors define specificity towards sequence-unrelated powdery mildew avirulence effectors with a predicted common RNase-like fold.
Plos Pathogens 17(2), 36.
10.1371/journal.ppat.1009223
More Details
(2021) Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates.
Biotechnology for Biofuels and Bioproducts 14(1), 234.
10.1186/s13068-021-02083-w
More Details
(2021) A multi-omic characterization of temperature stress in a halotolerant Scenedesmus strain for algal biotechnology.
Communications Biology 4(1), 15.
10.1038/s42003-021-01859-y
More Details
(2021) Genome-scale phylogenetic analyses confirm Olpidium as the closest living zoosporic fungus to the non-flagellated, terrestrial fungi.
Scientific Reports 11(1), 12.
10.1038/s41598-021-82607-4
More Details
(2021) Revisiting a 'simple' fungal metabolic pathway reveals redundancy, complexity and diversity.
Microbial Biotechnology , 13.
10.1111/1751-7915.13790
More Details
(2021) The Melampsora americana population on Salix purpurea in the Great Lakes region is highly diverse with a contributory influence of clonality.
Phytopathology .
10.1094/phyto-05-21-0201-r
More Details
(2021) Cryptic genetic structure and copy-number variation in the ubiquitous forest symbiotic fungus Cenococcum geophilum.
Environmental Microbiology .
10.1111/1462-2920.15752
More Details
(2021) Transcriptional acclimation and spatial differentiation characterize drought response by the ectomycorrhizal fungus Suillus pungens.
New Phytologist 234(6), 1910-1913.
10.1111/nph.17816
More Details
(2021) Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytologist 233(3), 1317-1330.
10.1111/nph.17873
More Details
(2021) The F-box protein gene exo-1 is a target for reverse engineering enzyme hypersecretion in filamentous fungi.
Proceedings of the National Academy of Sciences of the United States of America 118(26), e2025689118.
10.1073/pnas.2025689118
More Details
(2021) PhycoCosm, a comparative algal genomics resource.
Nucleic Acids Res 49(D1), D1004-D1011.
10.1093/nar/gkaa898
More Details
(2021) Draft genome sequences of strains CBS6241 and CBS6242 of the basidiomycetous yeast Filobasidium floriforme.
G3: Genes, Genomes, Genetics 12(2), jkab398.
10.1093/g3journal/jkab398
More Details
(2021) Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay.
Environmental Microbiology , 17.
10.1111/1462-2920.15423
More Details
(2021) Genomic characterization of three marine fungi, including Emericellopsis atlantica sp. nov. with signatures of a generalist lifestyle and marine biomass degradation.
IMA Fungus 12(1).
10.1186/s43008-021-00072-0
More Details
(2021) Evidence for Lignocellulose-Decomposing Enzymes in the Genome and Transcriptome of the Aquatic Hyphomycete Clavariopsis aquatica.
Journal of Fungi 7(10), 854.
10.3390/jof7100854
More Details
(2021) Abscisic acid supports colonization of Eucalyptus grandis roots by the mutualistic ectomycorrhizal fungus Pisolithus microcarpus.
New Phytologist 233(2), 966-982.
10.1111/nph.17825
More Details
(2021) Aspects of the Neurospora crassa Sulfur Starvation Response Are Revealed by Transcriptional Profiling and DNA Affinity Purification Sequencing.
mSphere 6(5), e00564-21.
10.1128/mSphere.00564-21
More Details
(2021) DNA affinity purification sequencing and transcriptional profiling reveal new aspects of nitrogen regulation in a filamentous fungus.
Proceedings of the National Academy of Sciences 118(13), e2009501118.
10.1073/pnas.2009501118
More Details
(2021) IMITATION SWITCH is required for normal chromatin structure and gene repression in PRC2 target domains.
Proceedings of the National Academy of Sciences of the United States of America 118(4), 9.
10.1073/pnas.2010003118
More Details
(2021) Multi-Omics Driven Metabolic Network Reconstruction and Analysis of Lignocellulosic Carbon Utilization in Rhodosporidium toruloides.
Frontiers in Bioengineering and Biotechnology 8, 16.
10.3389/fbioe.2020.612832
More Details
(2021) Further engineering of R. toruloides for the production of terpenes from lignocellulosic biomass.
Biotechnology for Biofuels 14(1).
10.1186/s13068-021-01950-w
More Details
(2021) Symbiotic nitrogen fixation in the reproductive structures of a basidiomycete fungus.
Current Biology 31(17), 3905-3914.e6.
10.1016/j.cub.2021.06.033
More Details
(2021) Heterospecific Neighbor Plants Impact Root Microbiome Diversity and Molecular Function of Root Fungi.
Frontiers in Microbiology 12, 680267.
10.3389/fmicb.2021.680267
More Details
(2021) Annotated genome sequence of the high-biomass-producing yellow-green alga tribonema minus.
Microbiology Resource Announcements 10(24).
10.1128/MRA.00327-21
More Details
(2021) Metabolic Modeling of Fungi.
, 394-405.
10.1016/b978-0-12-809633-8.21068-6
More Details
(2021) Genetic determinants of endophytism in the Arabidopsis root mycobiome.
Nature Communications 12(1), 7227.
10.1038/s41467-021-27479-y
More Details
(2021) RNA-editing in Basidiomycota, revisited.
ISME Communications 1(1), 70.
10.1038/s43705-021-00037-9
More Details
(2021) Draft Genome Sequences of the Black Truffles Tuber brumale Vittad. and Tuber indicum Cook & Massee.
Microbiology Resource Announcements 10(4), 3.
10.1128/mra.00799-20
More Details
(2021) Diploid genomic architecture of Nitzschia inconspicua, an elite biomass production diatom.
Scientific Reports 11(1).
10.1038/s41598-021-95106-3
More Details
(2021) A multiomic approach to understand how pleurotus eryngii transforms non-woody lignocellulosic material.
Journal of Fungi 7(6).
10.3390/jof7060426
More Details
(2021) CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner.
The Cell Surface 7, 100050.
https://doi.org/10.1016/j.tcsw.2021.100050
More Details
(2021) Genomic Signatures of a Major Adaptive Event in the Pathogenic Fungus Melampsora larici-populina.
Genome Biology and Evolution 14(1), evab279.
10.1093/gbe/evab279
More Details
(2021) Genome, transcriptome and secretome analyses of the antagonistic, yeast-like fungus aureobasidium pullulansto identify potential biocontrol genes.
Microbial Cell 8(8).
10.15698/MIC2021.08.757
More Details
(2021) Chromosome assembled and annotated genome sequence of Aspergillus flavus NRRL 3357.
G3: Genes, Genomes, Genetics 11(8).
10.1093/g3journal/jkab213
More Details
(2021) Anaerobic gut fungi are an untapped reservoir of natural products.
Proceedings of the National Academy of Sciences of the United States of America 118(18).
10.1073/pnas.2019855118
More Details
(2021) A Genomic Catalog of Stress Response Genes in Anaerobic Fungi for Applications in Bioproduction.
Frontiers in Fungal Biology 2(29).
10.3389/ffunb.2021.708358
More Details
(2021) Discovery of photosynthesis genes through whole-genome sequencing of acetaterequiring mutants of Chlamydomonas reinhardtii.
PLoS Genetics 17(9).
10.1371/journal.pgen.1009725
More Details
(2021) Exploring proteomes of robust yarrowia lipolytica isolates cultivated in biomass hydrolysate reveals key processes impacting mixed sugar utilization, lipid accumulation, and degradation.
mSystems 6(4).
10.1128/mSystems.00443-21
More Details
(2021) Experimentally Validated Reconstruction and Analysis of a Genome-Scale Metabolic Model of an Anaerobic Neocallimastigomycota Fungus.
mSystems 6(1), e00002-21.
10.1128/mSystems.00002-21
More Details
(2021) Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales.
New Phytologist 233(3), 1383-1400.
10.1111/nph.17858
More Details
(2021) Mechanisms of Manganese(II) Oxidation by Filamentous Ascomycete Fungi Vary With Species and Time as a Function of Secretome Composition.
Frontiers in Microbiology 12, 19.
10.3389/fmicb.2021.610497
More Details
(2021) Population genomics provides insights into the genetic basis of adaptive evolution in the mushroom-forming fungus Lentinula edodes.
Journal of Advanced Research 38, 91-106.
10.1016/j.jare.2021.09.008
More Details
(2021) RNA-Seq-based high-resolution linkage map reveals the genetic architecture of fruiting body development in shiitake mushroom, Lentinula edodes.
Computational and Structural Biotechnology Journal 19, 1641-1653.
10.1016/j.csbj.2021.03.016
More Details
(2021) RNA-Seq-based high-resolution linkage map reveals the genetic architecture of fruiting body development in shiitake mushroom, Lentinula edodes.
Computational and Structural Biotechnology Journal 19, 1641-1653.
10.1016/j.csbj.2021.03.016
More Details
(2021) Genome-wide role of codon usage on transcription and identification of potential regulators.
Proceedings of the National Academy of Sciences of the United States of America 118(6), 11.
10.1073/pnas.2022590118
More Details
2020
(2020) Constructing a yeast to express the largest cellulosome complex on the cell surface.
Proc Natl Acad Sci U S A 117(5), 2385-2394.
10.1073/pnas.1916529117
More Details
(2020) Identification of a gene encoding the last step of the L-rhamnose catabolic pathway in Aspergillus niger revealed the inducer of the pathway regulator.
Microbiol Res 234, 126426.
10.1016/j.micres.2020.126426
More Details
(2020) Genome Sequence of the Chestnut Blight Fungus Cryphonectria parasitica EP155: A Fundamental Resource for an Archetypical Invasive Plant Pathogen.
Phytopathology , PHYTO12190478A.
10.1094/PHYTO-12-19-0478-A
More Details
(2020) Narnaviruses: novel players in fungal-bacterial symbioses.
ISME J .
10.1038/s41396-020-0638-y
More Details
(2020) The architecture of metabolism maximizes biosynthetic diversity in the largest class of fungi.
Mol Biol Evol .
10.1093/molbev/msaa122
More Details
(2020) The Architecture of Metabolism Maximizes Biosynthetic Diversity in the Largest Class of Fungi.
Mol Biol Evol 37(10), 2838-2856.
10.1093/molbev/msaa122
More Details
(2020) 101 Dothideomycetes genomes: A test case for predicting lifestyles and emergence of pathogens.
Stud Mycol 96, 141-153.
10.1016/j.simyco.2020.01.003
More Details
(2020) A comparative genomics study of 23 Aspergillus species from section Flavi.
Nat Commun 11(1), 1106.
10.1038/s41467-019-14051-y
More Details
(2020) Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi.
New Phytol .
10.1111/nph.17160
More Details
(2020) Desert truffle genomes reveal their reproductive modes and new insights into plant-fungal interaction and ectendomycorrhizal lifestyle.
New Phytol .
10.1111/nph.17044
More Details
(2020) Conserved white rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus.
DNA Res .
10.1093/dnares/dsaa011
More Details
(2020) Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits.
Nature Communications 11(1).
10.1038/s41467-020-18795-w
More Details
(2020) Unique genomic traits for cold adaptation in Naganishia vishniacii, a polyextremophile yeast isolated from Antarctica.
FEMS Yeast Res .
10.1093/femsyr/foaa056
More Details
(2020) Synthetic hybrids of six yeast species.
Nat Commun 11(1), 2085.
10.1038/s41467-020-15559-4
More Details
(2020) Intra-species genetic variability drives carbon metabolism and symbiotic host interactions in the ectomycorrhizal fungus Pisolithus microcarpus.
Environ Microbiol .
10.1111/1462-2920.15320
More Details
(2020) Model Choice, Missing Data, and Taxon Sampling Impact Phylogenomic Inference of Deep Basidiomycota Relationships.
Syst Biol 69(1), 17-37.
10.1093/sysbio/syz029
More Details
(2020) Genomic Analysis Enlightens Agaricales Lifestyle Evolution and Increasing Peroxidase Diversity.
Mol Biol Evol .
10.1093/molbev/msaa301
More Details
(2020) Shed Light in the DaRk LineagES of the Fungal Tree of Life-STRES.
Life (Basel) 10(12).
10.3390/life10120362
More Details
(2020) Comparative genomics of pyrophilous fungi reveals a link between fire events and developmental genes.
Environ Microbiol .
10.1111/1462-2920.15273
More Details
(2020) Production of Fungal Mycelia in a Temperate Coniferous Forest Shows Distinct Seasonal Patterns.
J Fungi (Basel) 6(4).
10.3390/jof6040190
More Details
(2020) Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose.
Biotechnol Biofuels 13, 69.
10.1186/s13068-020-01702-2
More Details
(2020) Draft Genome Assemblies of Ionic Liquid-Resistant Yarrowia lipolytica PO1f and Its Superior Evolved Strain, YlCW001.
Microbiol Resour Announc 9(9).
10.1128/MRA.01356-19
More Details
(2020) The regulatory and transcriptional landscape associated with carbon utilization in a filamentous fungus.
Proc Natl Acad Sci U S A 117(11), 6003-6013.
10.1073/pnas.1915611117
More Details
2019
(2019) Comparative genomics reveals unique wood-decay strategies and fruiting body development in the Schizophyllaceae.
New Phytol .
10.1111/nph.16032
More Details
(2019) Comparative genomics reveals unique wood-decay strategies and fruiting body development in the Schizophyllaceae.
New Phytol .
10.1111/nph.16032
More Details
(2019) Genome sequencing of evolved aspergilli populations reveals robust genomes, transversions in A. flavus, and sexual aberrancy in non-homologous end-joining mutants.
BMC Biol 17(1), 88.
10.1186/s12915-019-0702-0
More Details
(2019) Broad-specificity GH131 beta-glucanases are a hallmark of Fungi and Oomycetes that colonise plants.
Environ Microbiol .
10.1111/1462-2920.14596
More Details
(2019) Fungal ecological strategies reflected in gene transcription - a case study of two litter decomposers.
Environ Microbiol .
10.1111/1462-2920.14873
More Details
(2019) An ectomycorrhizal fungus alters sensitivity to jasmonate, salicylate, gibberellin, and ethylene in host roots.
Plant Cell Environ .
10.1111/pce.13702
More Details
(2019) Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass.
Biotechnol Biofuels 12, 81.
10.1186/s13068-019-1422-y
More Details
(2019) Enzymatic Adaptation of Podospora anserina to Different Plant Biomass Provides Leads to Optimized Commercial Enzyme Cocktails.
Biotechnol J 14(4), e1800185.
10.1002/biot.201800185
More Details
(2019) Draft Genome Sequence of the Ectomycorrhizal Ascomycete Sphaerosporella brunnea.
Microbiol Resour Announc 8(50).
10.1128/MRA.00857-19
More Details
(2019) Diversity of cytosine methylation across the fungal tree of life.
Nat Ecol Evol 3(3), 479-490.
10.1038/s41559-019-0810-9
More Details
(2019) Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus Dichomitus squalens.
Microbiol Resour Announc 8(18).
10.1128/MRA.00264-19
More Details
(2019) Glucose-mediated repression of plant biomass utilization in the white-rot fungus Dichomitus squalens.
Appl Environ Microbiol .
10.1128/AEM.01828-19
More Details
(2019) Mixtures of aromatic compounds induce ligninolytic gene expression in the wood-rotting fungus Dichomitus squalens.
J Biotechnol .
10.1016/j.jbiotec.2019.11.014
More Details
(2019) Genome-scale phylogenetics reveals a monophyletic Zoopagales (Zoopagomycota, Fungi).
Mol Phylogenet Evol 133, 152-163.
10.1016/j.ympev.2019.01.006
More Details
(2019) Insights into an unusual Auxiliary Activity 9 family member lacking the histidine brace motif of lytic polysaccharide monooxygenases.
J Biol Chem 294(45), 17117-17130.
10.1074/jbc.RA119.009223
More Details
(2019) Insights into an unusual Auxiliary Activity 9 family member lacking the histidine brace motif of lytic polysaccharide monooxygenases.
J Biol Chem .
10.1074/jbc.RA119.009223
More Details
(2019) Phyllosticta citricarpa and sister species of global importance to Citrus.
Mol Plant Pathol 20(12), 1619-1635.
10.1111/mpp.12861
More Details
(2019) Defining the eco-enzymological role of the fungal strain Coniochaeta sp. 2T2.1 in a tripartite lignocellulolytic microbial consortium.
FEMS Microbiol Ecol .
10.1093/femsec/fiz186
More Details
(2019) Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network.
BMC Genomics 20(1), 853.
10.1186/s12864-019-6235-7
More Details
(2019) Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi.
Proc Natl Acad Sci U S A .
10.1073/pnas.1817822116
More Details
(2019) Evolution and comparative genomics of the most common Trichoderma species.
BMC Genomics 20(1), 485.
10.1186/s12864-019-5680-7
More Details
(2019) Genomic characterization of carbapenem-resistant Shewanella algae isolated from Asian hard clam (Meretrix lusoria).
Aquaculture 500, 300-304.
10.1016/j.aquaculture.2018.10.028
More Details
(2019) Fungal Endophytes of Populus trichocarpa Alter Host Phenotype, Gene Expression, and Rhizobiome Composition.
Mol Plant Microbe Interact 32(7), 853-864.
10.1094/MPMI-05-18-0133-R
More Details
(2019) Comparative Genomics and Transcriptomics to Analyze Fruiting Body Development in Filamentous Ascomycetes.
Genetics .
10.1534/genetics.119.302749
More Details
(2019) Comparative genomics of Rhizophagus irregularis, R. cerebriforme, R. diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina.
New Phytol .
10.1111/nph.15687
More Details
(2019) Early Diverging Fungus Mucor circinelloides Lacks Centromeric Histone CENP-A and Displays a Mosaic of Point and Regional Centromeres.
Curr Biol 29(22), 3791-3802 e6.
10.1016/j.cub.2019.09.024
More Details
(2019) Mitovirus and Mitochondrial Coding Sequences from Basal Fungus Entomophthora muscae.
Viruses 11(4).
10.3390/v11040351
More Details
(2019) Tracking of enzymatic biomass deconstruction by fungal secretomes highlights markers of lignocellulose recalcitrance.
Biotechnol Biofuels 12, 76.
10.1186/s13068-019-1417-8
More Details
(2019) Inorganic nitrogen availability alters Eucalyptus grandis receptivity to the ectomycorrhizal fungus Pisolithus albus but not symbiotic nitrogen transfer.
New Phytol .
10.1111/nph.16322
More Details
(2019) Diverse members of the Xylariales lack canonical mating-type regions.
Fungal Genet Biol 122, 47-52.
10.1016/j.fgb.2018.12.004
More Details
(2019) Megaphylogeny resolves global patterns of mushroom evolution.
Nat Ecol Evol .
10.1038/s41559-019-0834-1
More Details
(2019) Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi.
ISME J .
10.1038/s41396-019-0359-2
More Details
2018
(2018) The gold-standard genome of Aspergillus niger NRRL 3 enables a detailed view of the diversity of sugar catabolism in fungi.
Studies in mycology 91, 61-78.
10.1016/j.simyco.2018.10.001
More Details
(2018) Leveraging single-cell genomics to expand the fungal tree of life.
Nat Microbiol .
10.1038/s41564-018-0261-0
More Details
(2018) Early Diverging Insect-Pathogenic Fungi of the Order Entomophthorales Possess Diverse and Unique Subtilisin-Like Serine Proteases.
G3 (Bethesda) 8(10), 3311-3319.
10.1534/g3.118.200656
More Details
(2018) The fungus that came in from the cold: dry rot's pre-adapted ability to invade buildings.
ISME J 12(3), 791-801.
10.1038/s41396-017-0006-8
More Details
(2018) Enzymatic Adaptation of Podospora anserina to Different Plant Biomass Provides Leads to Optimized Commercial Enzyme Cocktails.
Biotechnol J , e1800185.
10.1002/biot.201800185
More Details
(2018) Litter chemistry influences decomposition through activity of specific microbial functional guilds.
Ecological Monographs 88(3), 429-444.
10.1002/ecm.1303/full
More Details
(2018) An analysis of codon bias in six red yeast species.
Yeast .
10.1002/yea.3359
More Details
(2018) Genome-wide analysis of cytochrome P450s of Trichoderma spp.: annotation and evolutionary relationships.
Fungal Biol Biotechnol 5, 12.
10.1186/s40694-018-0056-3
More Details
(2018) High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis.
New Phytol .
10.1111/nph.14989
More Details
(2018) Functional genomics of lipid metabolism in the oleaginous yeast Rhodosporidium toruloides.
Elife 7.
10.7554/eLife.32110
More Details
(2018) Dichomitus squalens partially tailors its molecular responses to the composition of solid wood.
Environ Microbiol .
10.1111/1462-2920.14416
More Details
(2018) Dichomitus squalens partially tailors its molecular responses to the composition of solid wood.
Environ Microbiol 20(11), 4141-4156.
10.1111/1462-2920.14416
More Details
(2018) Secretome Analysis from the Ectomycorrhizal Ascomycete Cenococcum geophilum.
Front Microbiol 9, 141.
10.3389/fmicb.2018.00141
More Details
(2018) Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts.
PLoS Genet 14(4), e1007322.
10.1371/journal.pgen.1007322
More Details
(2018) Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance.
Studies in mycology 91, 23-36.
10.1016/j.simyco.2018.10.003
More Details
(2018) The obligate alkalophilic soda-lake fungus Sodiomyces alkalinus has shifted to a protein diet.
Mol Ecol .
10.1111/mec.14912
More Details
(2018) Phylogenetic and Phylogenomic Definition of Rhizopus Species.
G3 (Bethesda) 8(6), 2007-2018.
10.1534/g3.118.200235
More Details
(2018) Multi-omic analyses of extensively decayed Pinus contorta reveal expression of diverse array of lignocellulose degrading enzymes.
Appl Environ Microbiol .
10.1128/AEM.01133-18
More Details
(2018) Broad genomic sampling reveals a smut pathogenic ancestry of the fungal clade Ustilaginomycotina.
Mol Biol Evol .
10.1093/molbev/msy072
More Details
(2018) Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species.
Proc Natl Acad Sci U S A 115(4), E753-E761.
10.1073/pnas.1715954115
More Details
(2018) Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi.
Sci Rep 8(1), 6321.
10.1038/s41598-018-24686-4
More Details
(2018) Evolutionary instability of CUG-Leu in the genetic code of budding yeasts.
Nat Commun 9(1), 1887.
10.1038/s41467-018-04374-7
More Details
(2018) Earth BioGenome Project: Sequencing life for the future of life.
Proc Natl Acad Sci U S A 115(17), 4325-4333.
10.1073/pnas.1720115115
More Details
(2018) Russulaceae: a new genomic dataset to study ecosystem function and evolutionary diversification of ectomycorrhizal fungi with their tree associates.
New Phytol 218(1), 54-65.
10.1111/nph.15001
More Details
(2018) Genome-Wide Analysis of Corynespora cassiicola Leaf Fall Disease Putative Effectors.
Front Microbiol 9, 276.
10.3389/fmicb.2018.00276
More Details
(2018) Draft Genome Sequence of the Basidiomycete White-Rot Fungus Phlebia centrifuga.
Genome Announc 6(14).
10.1128/genomeA.01414-17
More Details
(2018) Genomic and exoproteomic diversity in plant biomass degradation approaches among Aspergilli.
Studies in mycology 91, 79-99.
10.1016/j.simyco.2018.09.001
More Details
(2018) Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists.
New Phytol 217(3), 1213-1229.
10.1111/nph.14974
More Details
(2018) Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass.
Biotechnol Biofuels 11, 201.
10.1186/s13068-018-1198-5
More Details
(2018) Draft Genome Sequence of Tuber borchii Vittad., a Whitish Edible Truffle.
Genome Announc 6(25).
10.1128/genomeA.00537-18
More Details
(2018) Coniella lustricola, a new species from submerged detritus.
Mycological Progress 17(1-2), 191-203.
10.1007/s11557-017-1337-6
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(2018) Catabolic repression in early-diverging anaerobic fungi is partially mediated by natural antisense transcripts.
Fungal Genet Biol 121, 1-9.
10.1016/j.fgb.2018.09.004
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(2018) Catabolic repression in early-diverging anaerobic fungi is partially mediated by natural antisense transcripts.
Fungal Genetics and Biology 121, 1-9.
10.1016/j.fgb.2018.09.004
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(2018) Uncovering secondary metabolite evolution and biosynthesis using gene cluster networks and genetic dereplication.
Scientific Reports 8, 12.
10.1038/s41598-018-36561-3
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(2018) Genomic and Genetic Insights Into a Cosmopolitan Fungus, Paecilomyces variotii (Eurotiales).
Frontiers in Microbiology 9(3058), 21.
10.3389/fmicb.2018.03058
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(2018) Talaromyces borbonicus, sp. nov., a novel fungus from biodegraded Arundo donax with potential abilities in lignocellulose conversion.
Mycologia 110(2), 316-324.
10.1080/00275514.2018.1456835
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(2018) Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri.
Nat Genet .
10.1038/s41588-018-0246-1
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(2018) Genetic dissection of interspecific differences in yeast thermotolerance.
Nat Genet 50(11), 1501-1504.
10.1038/s41588-018-0243-4
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(2018) Genome-reconstruction for eukaryotes from complex natural microbial communities.
Genome Res 28(4), 569-580.
10.1101/gr.228429.117
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(2018) Substrate-Specific Differential Gene Expression and RNA editing in the Brown Rot Fungus Fomitopsis pinicola.
Appl Environ Microbiol 84(16).
10.1128/AEM.00991-18
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(2018) Genomics and Development of Lentinus tigrinus: A White-Rot Wood-Decaying Mushroom with Dimorphic Fruiting Bodies.
Genome Biol Evol 10(12), 3250-3261.
10.1093/gbe/evy246
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2017
(2017) Phylogenetics and Phylogenomics of Rust Fungi.
Adv Genet 100, 267-307.
10.1016/bs.adgen.2017.09.011
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(2017) Population genomics of picophytoplankton unveils novel chromosome hypervariability.
Sci Adv 3(7), e1700239.
10.1126/sciadv.1700239
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(2017) Comparative genomics of Coniophora olivacea reveals different patterns of genome expansion in Boletales.
BMC Genomics 18(1), 883.
10.1186/s12864-017-4243-z
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(2017) Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments.
Biotechnol Biofuels 10, 35.
10.1186/s13068-017-0700-9
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(2017) Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.
Genome Biol 18(1), 28.
10.1186/s13059-017-1151-0
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(2017) The ectomycorrhizal basidiomycete Hebeloma cylindrosporum undergoes early waves of transcriptional reprogramming prior to symbiotic structures differentiation.
Environ Microbiol 19(3), 1338-1354.
10.1111/1462-2920.13670
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(2017) Fungal and plant gene expression in the Tulasnella calospora-Serapias vomeracea symbiosis provides clues about nitrogen pathways in orchid mycorrhizas.
New Phytol 213(1), 365-379.
10.1111/nph.14279
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(2017) Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress.
PLoS Biol 15(12), e2004050.
10.1371/journal.pbio.2004050
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(2017) Draft genome sequence of a monokaryotic model brown-rot fungus Postia (Rhodonia) placenta SB12.
Genom Data 14, 21-23.
10.1016/j.gdata.2017.08.003
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(2017) A parts list for fungal cellulosomes revealed by comparative genomics.
Nat Microbiol 2, 17087.
10.1038/nmicrobiol.2017.87
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(2017) A parts list for fungal cellulosomes revealed by comparative genomics.
Nat Microbiol 2, 17087.
10.1038/nmicrobiol.2017.87
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(2017) Draft Genome Sequence of Coniochaeta ligniaria NRRL 30616, a Lignocellulolytic Fungus for Bioabatement of Inhibitors in Plant Biomass Hydrolysates.
Genome Announc 5(4).
10.1128/genomeA.01476-16
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(2017) Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: a case study using the lichen-forming genus Peltigera section Polydactylon.
Mol Phylogenet Evol .
10.1016/j.ympev.2017.08.013
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(2017) Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen -forming genus Peltigera section Polydactylon.
Molecular Phylogenetics and Evolution 117, 10-29.
10.1016/j.ympev.2017.08.013
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(2017) FunGAP: Fungal Genome Annotation Pipeline Using Evidence-based Gene Model Evaluation.
Bioinformatics .
10.1093/bioinformatics/btx353
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(2017) Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus.
Nature 541(7638), 536-540.
10.1038/nature20803
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(2017) Widespread adenine N6-methylation of active genes in fungi.
Nat Genet 49(6), 964-968.
10.1038/ng.3859
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(2017) Bacterial endosymbionts influence host sexuality and reveal reproductive genes of early divergent fungi.
Nat Commun 8(1), 1843.
10.1038/s41467-017-02052-8
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(2017) Comparative Genomics of the Ectomycorrhizal Sister Species Rhizopogon vinicolor and Rhizopogon vesiculosus (Basidiomycota: Boletales) Reveals a Divergence of the Mating Type B Locus.
G3 (Bethesda) 7(6), 1775-1789.
10.1534/g3.117.039396
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(2017) Comparative Genomics of the Ectomycorrhizal Sister Species Rhizopogon vinicolor and Rhizopogon vesiculosus (Basidiomycota: Boletales) Reveals a Divergence of the Mating Type B Locus.
G3 (Bethesda) 7(6), 1775-1789.
10.1534/g3.117.039396
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(2017) Genetic Bases of Fungal White Rot Wood Decay Predicted by Phylogenomic Analysis of Correlated Gene-Phenotype Evolution.
Mol Biol Evol 34(1), 35-44.
10.1093/molbev/msw238
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(2017) The draft genome sequence of the ascomycete fungus Penicillium subrubescens reveals a highly enriched content of plant biomass related CAZymes compared to related fungi.
J Biotechnol 246, 1-3.
10.1016/j.jbiotec.2017.02.012
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(2017) Comparative genomics and expression levels of hydrophobins from eight mycorrhizal genomes.
Mycorrhiza .
10.1007/s00572-016-0758-4
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(2017) The complete mitochondrial genome of the conifer needle endophyte, Phialocephala scopiformis DAOMC 229536 confirms evolutionary division within the fungal Phialocephala fortinii s.l. - Acephala appalanata species complex.
Fungal Biol 121(3), 212-221.
10.1016/j.funbio.2016.11.007
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(2017) The homothallic mating-type locus of the conifer needle endophyte Phialocephala scopiformis DAOMC 229536 (order Helotiales).
Fungal Biol 121(12), 1011-1024.
10.1016/j.funbio.2017.08.007
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(2017) The homothallic mating-type locus of the conifer needle endophyte Phialocephala scopiformis DAOMC 229536 (order Helotiales).
Fungal Biol 121(12), 1011-1024.
10.1016/j.funbio.2017.08.007
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(2017) Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria.
Nat Ecol Evol 1(12), 1931-1941.
10.1038/s41559-017-0347-8
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(2017) The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies.
Microbiol Spectr 5(5).
10.1128/microbiolspec.FUNK-0053-2016
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(2017) The transcription factor PDR-1 is a multi-functional regulator and key component of pectin deconstruction and catabolism in Neurospora crassa.
Biotechnol Biofuels 10, 149.
10.1186/s13068-017-0807-z
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(2017) The transcription factor PDR-1 is a multi-functional regulator and key component of pectin deconstruction and catabolism in Neurospora crassa.
Biotechnol Biofuels 10, 149.
10.1186/s13068-017-0807-z
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(2017) Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens.
Environ Microbiol .
10.1111/1462-2920.13669
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(2017) Characterization of four endophytic fungi as potential consolidated bioprocessing hosts for conversion of lignocellulose into advanced biofuels.
Appl Microbiol Biotechnol 101(6), 2603-2618.
10.1007/s00253-017-8091-1
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(2017) A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism.
PLoS Genet 13(5), e1006737.
10.1371/journal.pgen.1006737
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(2017) A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism.
PLoS Genet 13(5), e1006737.
10.1371/journal.pgen.1006737
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2016
(2016) Comparative and transcriptional analysis of the predicted secretome in the lignocellulose-degrading basidiomycete fungus Pleurotus ostreatus.
Environ Microbiol .
10.1111/1462-2920.13360
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(2016) Combating a Global Threat to a Clonal Crop: Banana Black Sigatoka Pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) Genomes Reveal Clues for Disease Control.
PLoS Genet 12(8), e1005876.
10.1371/journal.pgen.1005876
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(2016) Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles.
PLoS Genet 12(6), e1006108.
10.1371/journal.pgen.1006108
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(2016) Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication.
Curr Biol .
10.1016/j.cub.2016.04.038
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(2016) Draft Genome Sequence of Microdochium bolleyi, a Dark Septate Fungal Endophyte of Beach Grass.
Genome Announc 4(2).
10.1128/genomeA.00270-16
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(2016) The genome of Xylona heveae provides a window into fungal endophytism.
Fungal Biol 120(1), 26-42.
10.1016/j.funbio.2015.10.002
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(2016) The mitochondrial genome of the ethanol-metabolizing, wine cellar mold Zasmidium cellare is the smallest for a filamentous ascomycete.
Fungal Biol 120(8), 961-74.
10.1016/j.funbio.2016.05.003
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(2016) Genetics of mating in members of the Chaetomiaceae as revealed by experimental and genomic characterization of reproduction in Myceliophthora heterothallica.
Fungal Genet Biol 86, 9-19.
10.1016/j.fgb.2015.11.007
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(2016) Lipid metabolic changes in an early divergent fungus govern the establishment of a mutualistic symbiosis with endobacteria.
Proc Natl Acad Sci U S A 113(52), 15102-15107.
10.1073/pnas.1615148113
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(2016) Draft Genome Sequence of the White-Rot Fungus Obba rivulosa 3A-2.
Genome Announc 4(5).
10.1128/genomeA.00976-16
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(2016) Visual Comparative Omics of Fungi for Plant Biomass Deconstruction.
Front Microbiol 7, 1335.
10.3389/fmicb.2016.01335
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(2016) Ochratoxin A production by Penicillium thymicola.
Fungal Biol 120(8), 1041-9.
10.1016/j.funbio.2016.04.002
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(2016) Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum.
Nat Commun 7, 12662.
10.1038/ncomms12662
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(2016) Comparative genomics of biotechnologically important yeasts.
Proc Natl Acad Sci U S A .
10.1073/pnas.1603941113
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(2016) Early-branching gut fungi possess a large, comprehensive array of biomass-degrading enzymes.
Science .
10.1126/science.aad1431
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(2016) Robust and effective methodologies for cryopreservation and DNA extraction from anaerobic gut fungi.
Anaerobe 38, 39-46.
10.1016/j.anaerobe.2015.11.008
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(2016) A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data.
Mycologia 108(5), 1028-1046.
10.3852/16-042
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(2016) A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data.
Mycologia 108(5), 1028-1046.
10.3852/16-042
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(2016) Full Genome of Phialocephala scopiformis DAOMC 229536, a Fungal Endophyte of Spruce Producing the Potent Anti-Insectan Compound Rugulosin.
Genome Announc 4(1).
10.1128/genomeA.01768-15
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(2016) Identifying Aspects of the Post-Transcriptional Program Governing the Proteome of the Green Alga Micromonas pusilla.
PLoS One 11(7), e0155839.
10.1371/journal.pone.0155839
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(2016) Comparative Analysis of Secretome Profiles of Manganese(II)-Oxidizing Ascomycete Fungi.
PLoS One 11(7), e0157844.
10.1371/journal.pone.0157844
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2015
(2015) Draft Genome Sequence of Neurospora crassa Strain FGSC 73.
Genome Announc 3(2).
10.1128/genomeA.00074-15
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(2015) Genetic isolation between two recently diverged populations of a symbiotic fungus.
Mol Ecol .
10.1111/mec.13132
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(2015) Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants.
Genome Biol Evol 7(6), 1590-601.
10.1093/gbe/evv090
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(2015) Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus.
Biotechnol Biofuels 8, 216.
10.1186/s13068-015-0407-8
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(2015) Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus.
Biotechnol Biofuels 8, 216.
10.1186/s13068-015-0407-8
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(2015) Horizontal gene transfer and gene dosage drives adaptation to wood colonization in a tree pathogen.
Proc Natl Acad Sci U S A 112(11), 3451-6.
10.1073/pnas.1424293112
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(2015) Comparative genomics, proteomics and transcriptomics give new insight into the exoproteome of the basidiomycete Hebeloma cylindrosporum and its involvement in ectomycorrhizal symbiosis.
New Phytol .
10.1111/nph.13546
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(2015) Genome sequence of the plant growth promoting endophytic yeast Rhodotorula graminis WP1.
Front Microbiol 6, 978.
10.3389/fmicb.2015.00978
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(2015) Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii.
Fungal Genet Biol 76, 78-92.
10.1016/j.fgb.2015.02.002
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(2015) Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing.
PLoS One 10(7), e0132628.
10.1371/journal.pone.0132628
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(2015) Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists (vol 47, pg 410, 2015).
Nature Genetics 47(4), 410-415.
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(2015) Genomics and Transcriptomics Analyses of the Oil-Accumulating Basidiomycete Yeast Trichosporon oleaginosus: Insights into Substrate Utilization and Alternative Evolutionary Trajectories of Fungal Mating Systems.
MBio 6(4).
10.1128/mBio.00918-15
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(2015) Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype.
BMC Genomics 16, 326.
10.1186/s12864-015-1526-0
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(2015) Genome sequence of a white rot fungus Schizopora paradoxa KUC8140 for wood decay and mycoremediation.
J Biotechnol 211, 42-43.
10.1016/j.jbiotec.2015.06.426
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(2015) Strand-Specific RNA-Seq Analyses of Fruiting Body Development in Coprinopsis cinerea.
PLoS One 10(10), e0141586.
10.1371/journal.pone.0141586
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(2015) Comparative genomics of early-diverging mushroom-forming fungi provides insights into the origins of lignocellulose decay capabilities.
Mol Biol Evol .
10.1093/molbev/msv337
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(2015) Identification of a Novel Nematotoxic Protein by Challenging the Model Mushroom Coprinopsis cinerea with a Fungivorous Nematode.
G3 (Bethesda) 6(1), 87-98.
10.1534/g3.115.023069
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(2015) The Mutualist Laccaria bicolor Expresses a Core Gene Regulon During the Colonization of Diverse Host Plants and a Variable Regulon to Counteract Host-Specific Defenses.
Mol Plant Microbe Interact 28(3), 261-73.
10.1094/MPMI-05-14-0129-FI
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(2015) Degradation of Bunker C Fuel Oil by White-Rot Fungi in Sawdust Cultures Suggests Potential Applications in Bioremediation.
PLoS One 10(6), e0130381.
10.1371/journal.pone.0130381
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2014
(2014) Horizontal transfer of carbohydrate metabolism genes into ectomycorrhizal Amanita.
New Phytol .
10.1111/nph.13140
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(2014) Transcriptional responses of the Bdtf1-deletion mutant to the phytoalexin brassinin in the necrotrophic fungus Alternaria brassicicola.
Molecules 19(8), 10717-32.
10.3390/molecules190810717
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(2014) Identification and characterization of the polyketide synthase involved in ochratoxin A biosynthesis in Aspergillus carbonarius.
Int J Food Microbiol 179, 10-7.
10.1016/j.ijfoodmicro.2014.03.013
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(2014) Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species.
BMC Genomics 15, 549.
10.1186/1471-2164-15-549
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(2014) MycoCosm portal: gearing up for 1000 fungal genomes.
Nucleic Acids Res 42(Database issue), D699-704.
10.1093/nar/gkt1183
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(2014) Transposable Element Dynamics among Asymbiotic and Ectomycorrhizal Amanita Fungi.
Genome Biol Evol 6(7), 1564-78.
10.1093/gbe/evu121
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(2014) Analysis of the Phlebiopsis gigantea Genome, Transcriptome and Secretome Provides Insight into Its Pioneer Colonization Strategies of Wood.
PLoS Genet 10(12), e1004759.
10.1371/journal.pgen.1004759
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(2014) Analysis of clock-regulated genes in Neurospora reveals widespread posttranscriptional control of metabolic potential.
Proc Natl Acad Sci U S A 111(48), 16995-7002.
10.1073/pnas.1418963111
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(2014) Genomic adaptations of the halophilic Dead Sea filamentous fungus Eurotium rubrum.
Nat Commun 5, 3745.
10.1038/ncomms4745
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(2014) Expanding genomics of mycorrhizal symbiosis.
Front Microbiol 5, 582.
10.3389/fmicb.2014.00582
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(2014) Latent homology and convergent regulatory evolution underlies the repeated emergence of yeasts.
Nat Commun 5, 4471.
10.1038/ncomms5471
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(2014) The genome portal of the Department of Energy Joint Genome Institute: 2014 updates.
Nucleic Acids Res 42(Database issue), D26-31.
10.1093/nar/gkt1069
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(2014) Genomics of wood-degrading fungi.
Fungal Genet Biol .
10.1016/j.fgb.2014.05.001
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(2014) The phytoalexin camalexin induces fundamental changes in the proteome of Alternaria brassicicola different from those caused by brassinin.
Fungal Biol 118(1), 83-93.
10.1016/j.funbio.2013.11.005
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(2014) Duplications and losses in gene families of rust pathogens highlight putative effectors.
Front Plant Sci 5, 299.
10.3389/fpls.2014.00299
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(2014) The mutualist Laccaria bicolor expresses a core gene regulon during the colonization of diverse host plants and a variable regulon to counteract host-specific defenses.
Mol Plant Microbe Interact .
10.1094/MPMI-05-14-0129-FI
More Details
(2014) Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi.
Proc Natl Acad Sci U S A 111(27), 9923-8.
10.1073/pnas.1400592111
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(2014) Harnessing genetic diversity in Saccharomyces cerevisiae for fermentation of xylose in hydrolysates of alkaline hydrogen peroxide-pretreated biomass.
Appl Environ Microbiol 80(2), 540-54.
10.1128/AEM.01885-13
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(2014) Genome sequencing provides insight into the reproductive biology, nutritional mode and ploidy of the fern pathogen Mixia osmundae.
New Phytol 202(2), 554-64.
10.1111/nph.12653
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(2014) Draft Genome Sequence of a Rare Smut Relative, Tilletiaria anomala UBC 951.
Genome Announc 2(3).
10.1128/genomeA.00539-14
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(2014) Comparative Genomics of Saccharomyces cerevisiae Natural Isolates for Bioenergy Production.
Genome Biol Evol 6(9), 2557-66.
10.1093/gbe/evu199
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2013
(2013) Fungal genomes mining to discover novel sterol esterases and lipases as catalysts.
BMC Genomics 14, 712.
10.1186/1471-2164-14-712
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(2013) Phylogenetic and Phylogenomic overview of the Polyporales.
Mycologia .
10.3852/13-003
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(2013) Genome Sequences of Industrially Relevant Saccharomyces cerevisiae Strain M3707, Isolated from a Sample of Distillers Yeast and Four Haploid Derivatives.
Genome Announc 1(3).
10.1128/genomeA.00323-13
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(2013) Fungal-specific transcription factor AbPf2 activates pathogenicity in Alternaria brassicicola.
Plant J 75(3), 498-514.
10.1111/tpj.12217
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(2013) Comparative genome structure, secondary metabolite, and effector coding capacity across Cochliobolus pathogens.
PLoS Genet 9(1), e1003233.
10.1371/journal.pgen.1003233
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(2013) The central role of selenium in the biochemistry and ecology of the harmful pelagophyte, Aureococcus anophagefferens.
ISME J 7(7), 1333-43.
10.1038/ismej.2013.25
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(2013) Comparative Genomics Analysis of Trichoderma reesei Strains .
Industrial Biotechnology 9(6), 352-367.
10.1089/ind.2013.0015
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(2013) Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence.
G3 (Bethesda) 3(1), 41-63.
10.1534/g3.112.004044
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(2013) Pan genome of the phytoplankton Emiliania underpins its global distribution.
Nature 499(7457), 209-13.
10.1038/nature12221
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(2013) Insights into bilaterian evolution from three spiralian genomes.
Nature 493(7433), 526-531.
Doi 10.1038/Nature11696
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(2013) Genomewide annotation and comparative genomics of cytochrome P450 monooxygenases (P450s) in the polypore species Bjerkandera adusta, Ganoderma sp. and Phlebia brevispora.
Mycologia 105(6), 1445-55.
10.3852/13-002
More Details
(2013) Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis.
Proc Natl Acad Sci U S A 110(50), 20117-22.
10.1073/pnas.1313452110
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2012
(2012) Phylogenomic analysis of polyketide synthase-encoding genes in Trichoderma.
Microbiology 158(Pt 1), 147-54.
10.1099/mic.0.053462-0
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(2012) Harnessing glycosylation to improve cellulase activity.
Curr Opin Biotechnol 23(3), 338-45.
10.1016/j.copbio.2011.11.030
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(2012) The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
Genome Biol 13(5), R39.
10.1186/gb-2012-13-5-r39
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(2012) Transcription factor Amr1 induces melanin biosynthesis and suppresses virulence in Alternaria brassicicola.
PLoS Pathog 8(10), e1002974.
10.1371/journal.ppat.1002974
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(2012) Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs.
Nature 492(7427), 59-65.
10.1038/nature11681
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(2012) The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry.
PLoS Genet 8(11).
Artn E1003088Doi 10.1371/Journal.Pgen.1003088
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(2012) Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis.
Proceedings of the National Academy of Sciences of the United States of America 109(14), 5458-5463.
DOI 10.1073/pnas.1119912109
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(2012) The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes.
Science 336(6089), 1715-9.
10.1126/science.1221748
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(2012) The genome portal of the Department of Energy Joint Genome Institute.
Nucleic Acids Res 40(Database issue), D26-32.
10.1093/nar/gkr947
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(2012) Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen Phytophthora capsici.
Mol Plant Microbe Interact 25(10), 1350-60.
10.1094/MPMI-02-12-0028-R
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(2012) Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche.
Proc Natl Acad Sci U S A 109(43), 17501-6.
10.1073/pnas.1206847109
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(2012) Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi.
PLoS Pathog 8(12), e1003037.
10.1371/journal.ppat.1003037
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(2012) Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen.
New Phytologist 194(4), 1001-1013.
DOI 10.1111/j.1469-8137.2012.04128.x
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(2012) The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction.
Fungal Genet Biol 49(3), 217-26.
10.1016/j.fgb.2012.01.007
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(2012) The genome of wine yeast Dekkera bruxellensis provides a tool to explore its food-related properties.
International Journal of Food Microbiology 157(2), 202-209.
DOI 10.1016/j.ijfoodmicro.2012.05.008
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(2012) Phylogenetic, genomic organization and expression analysis of hydrophobin genes in the ectomycorrhizal basidiomycete Laccaria bicolor.
Fungal Genetics and Biology 49(3), 199-209.
DOI 10.1016/j.fgb.2012.01.002
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(2012) The ectomycorrhizal fungus Paxillus involutus converts organic matter in plant litter using a trimmed brown-rot mechanism involving Fenton chemistry.
Environmental Microbiology 14(6), 1477-1487.
DOI 10.1111/j.1462-2920.2012.02736.x
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(2012) A versatile toolkit for high throughput functional genomics with Trichoderma reesei.
Biotechnol Biofuels 5(1), 1.
10.1186/1754-6834-5-1
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(2012) A Zinc-Finger-Family Transcription Factor, AbVf19, Is Required for the Induction of a Gene Subset Important for Virulence in Alternaria brassicicola.
Molecular Plant-Microbe Interactions 25(4), 443-452.
Doi 10.1094/Mpmi-10-11-0275
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(2012) Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize.
Bmc Genomics 13.
Artn 444
Doi 10.1186/1471-2164-13-444
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(2012) Mapping N-Linked Glycosylation Sites in the Secretome and Whole Cells of Aspergillus niger Using Hydrazide Chemistry and Mass Spectrometry.
Journal of Proteome Research 11(1), 143-156.
Doi 10.1021/Pr200916k
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2011
(2011) Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88.
Genome Res 21(6), 885-97.
10.1101/gr.112169.110
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(2011) The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
Science 332(6032), 960-3.
10.1126/science.1203810
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(2011) Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris.
Nat Biotechnol 29(10), 922-7.
10.1038/nbt.1976
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(2011) The Ecoresponsive Genome of Daphnia pulex.
Science 331(6017), 555-561.
DOI 10.1126/science.1197761
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(2011) Trichoderma: the genomics of opportunistic success.
Nat Rev Microbiol 9(10), 749-59.
10.1038/nrmicro2637
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(2011) Obligate biotrophy features unraveled by the genomic analysis of rust fungi.
Proc Natl Acad Sci U S A 108(22), 9166-71.
10.1073/pnas.1019315108
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(2011) The plant cell wall-decomposing machinery underlies the functional diversity of forest fungi.
Science 333(6043), 762-5.
10.1126/science.1205411
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(2011) Massive changes in genome architecture accompany the transition to self-fertility in the filamentous fungus Neurospora tetrasperma.
Genetics 189(1), 55-69.
10.1534/genetics.111.130690
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(2011) Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics.
Proceedings of the National Academy of Sciences of the United States of America 108(11), 4352-4357.
DOI 10.1073/pnas.1016106108
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(2011) Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis.
Plos Genetics 7(6).
ARTN e1002070
DOI 10.1371/journal.pgen.1002070
More Details
(2011) Fueling the future with fungal genomics.
Mycology 2(3), 192-209.
10.1080/21501203.2011.584577
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(2011) The Arabidopsis lyrata genome sequence and the basis of rapid genome size change.
Nat Genet 43(5), 476-81.
10.1038/ng.807
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(2011) Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma.
Genome Biology 12(4).
Artn R40
Doi 10.1186/Gb-2011-12-4-R40
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(2011) Sequencing the fungal tree of life.
New Phytol 190(4), 818-21.
10.1111/j.1469-8137.2011.03688.x
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(2011) Rediscovery by Whole Genome Sequencing: Classical Mutations and Genome Polymorphisms in Neurospora crassa.
G3 (Bethesda) 1(4), 303-16.
10.1534/g3.111.000307
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(2011) Novel hydrophobins from Trichoderma define a new hydrophobin subclass: protein properties, evolution, regulation and processing.
J Mol Evol 72(4), 339-51.
10.1007/s00239-011-9438-3
More Details
(2011) The GC-Rich Mitochondrial and Plastid Genomes of the Green Alga Coccomyxa Give Insight into the Evolution of Organelle DNA Nucleotide Landscape.
Plos One 6(8).
ARTN e23624
DOI 10.1371/journal.pone.0023624
More Details
(2011) Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum.
Genome Biol 12(2), R20.
10.1186/gb-2011-12-2-r20
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(2011) Significant alteration of gene expression in wood decay fungi Postia placenta and Phanerochaete chrysosporium by plant species.
Appl Environ Microbiol 77(13), 4499-507.
10.1128/AEM.00508-11
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(2011) Comparative genomics of xylose-fermenting fungi for enhanced biofuel production.
Proc Natl Acad Sci U S A 108(32), 13212-7.
10.1073/pnas.1103039108
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2010
(2010) The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
Plant Cell 22(9), 2943-55.
10.1105/tpc.110.076406
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(2010) The genome of Naegleria gruberi illuminates early eukaryotic versatility.
Cell 140(5), 631-42.
10.1016/j.cell.2010.01.032
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(2010) The genome of the Western clawed frog Xenopus tropicalis.
Science 328(5978), 633-6.
10.1126/science.1183670
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(2010) Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides.
Nucleic Acids Res 38(16), 5535-41.
10.1093/nar/gkq301
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(2010) Genome sequence of the model mushroom Schizophyllum commune.
Nat Biotechnol 28(9), 957-63.
10.1038/nbt.1643
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(2010) Genomic analysis of organismal complexity in the multicellular green alga Volvox carteri.
Science 329(5988), 223-6.
10.1126/science.1188800
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(2010) Analysis of the complete mitochondrial genome sequences of the soybean rust pathogens phakopsora pachyrhizi and p. meibomiae.
Mycologia 102(4), 887-97.
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(2010) Comparative transcriptome and secretome analysis of wood decay fungi Postia placenta and Phanerochaete chrysosporium.
Appl Environ Microbiol 76(11), 3599-610.
10.1128/AEM.00058-10
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(2010) Laccase and its role in production of extracellular reactive oxygen species during wood decay by the brown rot basidiomycete Postia placenta.
Appl Environ Microbiol 76(7), 2091-7.
10.1128/AEM.02929-09
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2009
(2009) The Genome of Nectria haematococca: Contribution of Supernumerary Chromosomes to Gene Expansion.
Plos Genetics 5(8).
ARTN e1000618
DOI 10.1371/journal.pgen.1000618
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(2009) Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing.
Proceedings of the National Academy of Sciences of the United States of America 106(38), 16151-16156.
DOI 10.1073/pnas.0905848106
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(2009) Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion.
Proc Natl Acad Sci U S A 106(6), 1954-9.
10.1073/pnas.0809575106
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(2009) The Sorghum bicolor genome and the diversification of grasses.
Nature 457(7229), 551-6.
10.1038/nature07723
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(2009) Telomere organization in the ligninolytic basidiomycete Pleurotus ostreatus.
Appl Environ Microbiol 75(5), 1427-36.
10.1128/AEM.01889-08
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(2009) Transcriptomic response of the mycoparasitic fungus Trichoderma atroviride to the presence of a fungal prey.
BMC Genomics 10, 567.
10.1186/1471-2164-10-567
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(2009) Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
Science 324(5924), 268-72.
10.1126/science.1167222
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(2009) Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger.
Bmc Genomics 10.
Artn 61
Doi 10.1186/1471-2164-10-61
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(2009) Proteomics for validation of automated gene model predictions.
Methods Mol Biol 492, 447-52.
10.1007/978-1-59745-493-3_27
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2008
(2008) Analyses of expressed sequence tags from the maize foliar pathogen Cercospora zeae-maydis identify novel genes expressed during vegetative, infectious, and reproductive growth.
BMC Genomics 9, 523.
10.1186/1471-2164-9-523
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(2008) The Phaeodactylum genome reveals the evolutionary history of diatom genomes.
Nature 456(7219), 239-44.
10.1038/nature07410
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(2008) High-resolution metagenomics targets specific functional types in complex microbial communities.
Nature Biotechnology 26(9), 1029-1034.
Doi 10.1038/Nbt.1488
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(2008) The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans.
Nature 451(7180), 783-788.
Doi 10.1038/Nature06617
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(2008) A genetic linkage map for the ectomycorrhizal fungus Laccaria bicolor and its alignment to the whole-genome sequence assemblies.
New Phytol 180(2), 316-28.
10.1111/j.1469-8137.2008.02614.x
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(2008) The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis.
Nature 452(7183), 88-U7.
Doi 10.1038/Nature06556
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(2008) Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina).
Nat Biotechnol 26(5), 553-60.
10.1038/nbt1403
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(2008) The amphioxus genome and the evolution of the chordate karyotype.
Nature 453(7198), 1064-71.
10.1038/nature06967
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(2008) The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
Science 319(5859), 64-69.
DOI 10.1126/science.1150646
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(2008) The Trichoplax genome and the nature of placozoans.
Nature 454(7207), 955-60.
10.1038/nature07191
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(2008) Intraspecific comparison and annotation of two complete mitochondrial genome sequences from the plant pathogenic fungus Mycosphaerella graminicola.
Fungal Genet Biol 45(5), 628-37.
10.1016/j.fgb.2007.12.005
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2007
(2007) Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis.
Nat Biotechnol 25(3), 319-26.
10.1038/nbt1290
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(2007) Use of simulated data sets to evaluate the fidelity of metagenomic processing methods.
Nature Methods 4(6), 495-500.
Doi 10.1038/Nmeth1043
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(2007) The Chlamydomonas genome reveals the evolution of key animal and plant functions.
Science 318(5848), 245-251.
Doi 10.1126/Science.1143609
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(2007) The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation.
Proceedings of the National Academy of Sciences of the United States of America 104(18), 7705-7710.
Doi 10.1073/Pnas.0611046104
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(2007) Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization.
Science 317(5834), 86-94.
10.1126/science.1139158
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2006
(2006) Aspergillus niger genomics: Past, present and into the future.
Medical Mycology 44, S17-S21.
Doi 10.1080/13693780600921037
More Details
(2006) Comparative genomics of the lactic acid bacteria.
Proc Natl Acad Sci U S A 103(42), 15611-6.
10.1073/pnas.0607117103
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(2006) The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
Science 313(5793), 1596-1604.
Doi 10.1126/Science.1128691
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(2006) Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis.
Science 313(5791), 1261-1266.
Doi 10.1126/Science.1128796
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(2006) Computational analysis of the Phanerochaete chrysosporium v2.0 genome database and mass spectrometry identification of peptides in ligninolytic cultures reveal complex mixtures of secreted proteins.
Fungal Genetics and Biology 43(5), 343-356.
Doi 10.1016/J.Fgb.2006.01.003
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2004
(2004) The sequence and analysis of duplication-rich human chromosome 16.
Nature 432(7020), 988-94.
10.1038/nature03187
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(2004) Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78.
Nature Biotechnology 22(6), 695-700.
10.1038/nbt967
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(2004) The DNA sequence and comparative analysis of human chromosome 5.
Nature 431(7006), 268-74.
10.1038/nature02919
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