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Natural Prodcast Episode 10: A Primer on Genome Mining
… out where I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome sequences. … Yu et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did you succeed in … Microbiomes” paper is here . Read the associated JGI news release here . Software we discussed, used for genome …
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CSP New Investigator Call
… proposal submission. Sequence requests should not exceed 3 Tb in total. Proposals for this call may be submitted at …
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New Lineages of Life Group
… metagenomics. Nature Reviews Microbiology volume 20, 721–736 JC Villada, F Schulz (2022) The endosymbiotic box of protective tricks. Nature Reviews Microbiology 20 (5), 255-255 Schulz et al. (2020) Giant virus diversity and … through global metagenomics. Nature. 578 (7795), 432-436 Schulz et al. (2020) Advantages and limits of …
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Natural Prodcast Episode 24: Jackie Winter and SMC
Great Salt Lake, which is a hypersaline terminal lake about 30 minutes away from campus. And we’re finding some really, … And you have these different types of particulate like 2.5, 10 PPMs and just the size of the particle and how far … there a way to do that? DAN UDWARY: Well, so there’s good news and bad news on that. So one of the things that we’re …
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Natural Prodcast Episode 14: Nigel Mouncey
… that the JGI’s Annual User Meeting is coming up, August 30th through September 1st. Three days of great science, and … never forced it on me, but we always had these scientific news magazines lying around at home. And I would just pick … was bioengineering bio-process R&D, BBRD, a group of about 75 people. So our biggest project was the spinosyn family of …
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Natural Prodcast Episode 7: Ben Shen
… because they’re so reactive. BEN: …going back to the 1950s. But the structure of which was not known until the … So I wanted to ask you also about – because you were in the news recently – TSRI has acquired the Pfizer strain … genome, the genome predicts they often can produce around 30 – more than 30 compounds. So, this was a complete …
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GAL08, an Uncultivated Group of Acidobacteria, Is a Dominant Bacterial Clade in a Neutral Hot Spring
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Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production
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Natural Prodcast Episode 6: Marc Chevrette
… over time. And yeah, I mean, that was let’s see, maybe 5,6,7 years ago, and I’ve – I haven’t looked back. ALISON: … have no extra genes hanging around, they still dedicate 20-30% of their genome to secondary metabolism. So it’s very … that’s really popped up at funding agencies and the popular news recently because a lot of soldiers in the Iraq and …
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Natural Prodcast Episode 17: Cassandra Quave
… scientists to think about, because if you look at the 36 hotspots, or terrestrial biodiversity hotspots that we … than HIV/AIDS does every year in the US and it has since 2005 even though we technically have a number of different … plants and bringing them back is not your jam, the good news is there’s this amazing resource that can be provided …
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Natural Prodcast Episode 12: Nadine Ziemert
Europe. So if there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And … all these 120 genomes, and each of them have– I don’t know– 30 gene clusters or so. So I think I spent two years only … metabolites, or if it’s not enough if I just go in 3 very different soils outside my yard or so. Also, what we …
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A Plant Root Atlas for Tracking Developmental Trajectories
… type and cell identity mutants . Dev Cell. 2022 Feb 28. S1534-5807(22)00033-8.doi: 10.1016/j.devcel.2022.01.008 … Single-Cell Data Viewer Tool on Phytozome Biosciences News:  Plant Single-Cell Solutions for Energy and the …
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