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Natural Prodcast Episode 15: Katherine Duncan
… co-leading the on-trip science program for Homeward Bound 3. And I currently co-leading the science program for the … Antarctica that have– some of being carbon-dated to kind of 15,000, 150,000 years ago. So this is 1,000, 2,000, 3,000 meters below sea level. And we’ve managed to culture, …
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Viral Genomics Group
… can tailed phages be?  Nature Reviews Microbiology.   19 , 407 Berg, M. et al. (2021) Host population diversity as a … with long standing virus-host interactions. ISME J.   15 , 1569–1584 Roux, S. et al. (2019) Cryptic inoviruses … an Uncultivated Virus Genome (MIUViG).  Nature Biotech .  37 , 29–37 Roux S, et al. (2016) Ecogenomics and potential …
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Operating Expenses
FY2023 Spending Profile The JGI is funded primarily by the DOE …
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Natural Prodcast Episode 19: Bill Fenical
FENICAL: I had begun diving when I was a teenager, about 15. I grew up in Northern California. And we’d go down to … underwater. But thankfully that worked out. And I spent 30, 40 years diving all over the world and bringing samples … chemistry. And I’ve studied microbiology for about 25, 30 years. And I can actually go give a talk at ASM [The …
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Natural Prodcast Episode 24: Jackie Winter and SMC
Great Salt Lake, which is a hypersaline terminal lake about 30 minutes away from campus. And we’re finding some really, … there a way to do that? DAN UDWARY: Well, so there’s good news and bad news on that. So one of the things that we’re … sure. So yeah. So it’s a lot. It’s a lot. Like, 10, 12, 15 million BGCs is definitely kind of the baseline of where …
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Natural Prodcast Episode 10: A Primer on Genome Mining
Yu et al, APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2004, 1253–1262, 70:3 ALISON TAKEMURA: And so did you succeed in … in this kind of a vein. We sequenced in the end about 150,000 genomes, just to look for a very specific class of … Microbiomes” paper is here . Read the associated JGI news release here . Software we discussed, used for genome …
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CSP New Investigator Call
… proposal submission. Sequence requests should not exceed 3 Tb in total. Proposals for this call may be submitted at …
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Natural Prodcast Episode 4: Nancy Keller
… the primer podcasts ( part 1 here , part 2 here , and part 3 here ), which you should be able to find earlier in the … on microbiomes they only talk about the bacteria. My god! 30% of our gut microbes are fungi. It’s really frustrating … Like, ironically, yeast, which has a small genome has 15 chromosomes. Where Aspergillus has eight chromosomes. It …
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New Lineages of Life Group
… metagenomics. Nature Reviews Microbiology volume 20, 721–736 JC Villada, F Schulz (2022) The endosymbiotic box of … through global metagenomics. Nature. 578 (7795), 432-436 Schulz et al. (2020) Advantages and limits of … Microbiology. 18 (8), 2326-2342 Schulz and Horn (2015) Intranuclear bacteria: inside the cellular control …
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Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07T)
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Natural Prodcast Episode 14: Nigel Mouncey
… that the JGI’s Annual User Meeting is coming up, August 30th through September 1st. Three days of great science, and … never forced it on me, but we always had these scientific news magazines lying around at home. And I would just pick … throughput screening platform where we’d look at 10,000, 15,000, 20,000 mutants a week. We started doing a whole …
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Natural Prodcast Episode 7: Ben Shen
So I wanted to ask you also about – because you were in the news recently – TSRI has acquired the Pfizer strain … genome, the genome predicts they often can produce around 30 – more than 30 compounds. So, this was a complete … at several natural product enediyne structures, Ben’s 2015 paper on genome mining for enediynes is one of my …
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