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Natural Prodcast Episode 24: Jackie Winter and SMC
… of Natural Prodcast. A little bit of a bonus episode, since I’m off schedule, but this is an important one that … Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and ready … are familiar with JGI’s IMG data portal , the Integrated Microbial Genomics, there was a subsection of that called …
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Microbial Program
The JGI’s Microbial Program focuses on using cutting-edge sequencing, … inter-organismal interactions. These insights are crucial for addressing key environmental challenges, such as … using advanced sequencing technologies to explore microbial diversity — with an emphasis on bacteria and archaea, and …
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Natural Prodcast Episode 23: Aaron Puri
… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m … And one would envision that microorganisms have evolved multiple variations of these compounds. And so if you’re … JGI is we identified using some different computational methods a bunch of different syntheses that make quorum …
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Natural Prodcast Episode 13: Francisco Barona Goméz
Mexico, and an incredibly bright guy who’s been thinking for a long time about the evolution and natural products … is that you could, therefore, expect a lot of chemical diversity. So many compounds will fulfill the same function. … UGA-Langebio in Irapuato, Mexico. His interests are in microbial diversity and evolution, particularly as how …
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Natural Prodcast Episode 7: Ben Shen
… of secondary metabolism.  DAN: Hello, and welcome back for Episode 7 of the Natural Prodcast. It’s been about a … the enediyne we have isolated to date by the traditional methods. But more importantly, we hope through enediyne that … genomic revolution, to me, as a natural part chemist for microbial natural product, is that I love microbial natural …
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Metabolomics
… strengthens -omics technologies at the JGI by identifying the actual molecules present in an environment that … of new molecules and pathways. The JGI Metabolomics Platform delivers rich metabolite profiles from diverse … liquid chromatography mass spectrometry (LC-MS) based methods in combination with advanced computational analysis. …
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Natural Prodcast Episode 8: Eric Schmidt
… of secondary metabolism.  DAN: Hey there and welcome back for Episode 8 of Natural Prodcast. This week, we have our … with animal metabolism itself, and it’s really amazing what diversity there is in animals. I think, even despite the … them. And so, I spent a number of years trying various methods, back in the old days, to figure out how they’re …
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Metagenome Program
… genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … diversity and metabolic potential, with implications for energy production, environmental sustainability, and … tools for analyzing viral fragments via IMG/VR and methods to capture  environmental viral populations. …
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Natural Prodcast Episode 9: Roger Linington
… … DAN: Welcome back for episode 9 of Natural Prodcast. This week, Alison and I … to try and create an open source database of all known microbial natural products. So if you think about natural … spectrometry hardware, software, new developments in NMR methods, ultra fast methods for acquisition. Things like …
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Special Initiatives & Programs
… sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, including awards funded through  … to accelerate the domestication of perennials. CBI creates methods for high-yield production of advanced biofuels that … breakthroughs in basic science, and is exploring microbial-based synthesis of fuels beyond ethanol. … The JGI …
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Single Cell Research Group
… the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from … in 1985, which highlights our skewed understanding of microbial metabolism towards a minority of cultivated …
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FICUS
The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique … researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … samples of the spatial, temporal, taxonomic (environmental, microbial, plants, invertebrate, and vertebrate), and …
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