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Plant Program
With collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to … to environmental changes. The program lays the groundwork for sustainable solutions to current problems facing … renewable energy and agricultural productivity. Research spans diverse areas — from understanding how terrestrial …
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The More the Merrier: Making the Case for Plant Pan-genomes
… evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base … nonredundant set of genes found in a species, but in this case, the team included two species in the pan-genome . …
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Natural Prodcast Episode 17: Cassandra Quave
… … Dan Udwary: Hey everybody! Welcome back for Natural Prodcast episode 17. The guest we have this week … to say it’s so awesome! For those of you want to understand more about natural products and drug discovery, or the … our modern medicines are derived from nature, and in many cases from plants. And so I think of nature as giving us the …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… and scientists of secondary metabolism. Welcome back for our second season of Natural Prodcast. This first … just come out where I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome … molecules together that become bioactive molecules in some cases, right? ALISON TAKEMURA: Right, right, got it. And …
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Natural Prodcast Episode 11: Marnix Medema
… to try to get some funding for this thing because I needed more people to work on things, and to actually do some … ever touched a pipet again except for, of course, some cases when journalists come when they want to see you handle a pipet for making a nice video. Alison Takemura: Marnix, It’s just from …
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Plant Program User Advisory Committee
The Plant Program Advisory Committee is chartered to offer … on the effective management and strategic objectives of the plant program. The committee serves as the program's key external advisory panel and advocate of the program's strategy, operations and …
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Products
… to completion of standard analysis.  Raw data is provided for all sequencing products below. In addition, JGI will … that your request is appropriate for that call. Learn more about the  average base outputs for each product. For … contigs. Assembly, annotation ( IMG ) Depends on project Plant and Algal Standard Draft Whole genome shotgun …
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John Vogel
Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the … the evolutionary and practical significance of plant pan-genomes including understanding polyploid genome …
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Natural Prodcast Episode 14: Nigel Mouncey
… … DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot … is totally free. It’s a great opportunity to learn more about JGI, hear some excellent talk from our users and … And so I think this is really cool technology now that is making up a lot of our expression platform work. And I think …
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Plant-Microbial Interactions Group
Plants are complex organisms that harbor a fantastic … experimental characterization methods, in addition to bioinformatics tools to elucidate phage function in this … tripartite plant-bacterial-phage model system. We seek to expand beyond this model system by identifying phages and …
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FICUS-NERSC/KBASE
… discovery at the DOE Office of Science through high performance computing (HPC) and data analysis.  The DOE Systems … and analyses available to the community at large. In most cases where the JGI provides more customized analysis, the JGI also participates in …
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Natural Prodcast Episode 3: The Primer, Part 3
… episodes has sparked your interest, and you want to learn more, then I highly recommend David Hopwood’s book called  … lots of new molecules being discovered lots of new things making it to market and they wanted to keep that trend the … long process of natural products-based discovery. Not the case, as you say, not too many new drugs making it to …
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