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… improve the accuracy of functional predictions and speed up genome analysis. Additionally, the Plant Program is … and environmental sustainability. … Plant Flagship Genomes are selected through discussion with the JGI Plant … in plants and will accelerate gene discovery. BrachyPan on Phytozome (see Brachypodium Resources below) PennyPan on …

… for addressing key environmental challenges, such as improving soil health, carbon sequestration and bioeconomy … driven prioritization lists for laboratory isolation and genome sequencing of underexplored bacterial and archaeal … catalog : Beyond minimal draft and improved draft microbial genomes the program offers single-cell sequencing, …

… the DOE's vision for a sustainable, bio-based economy. … Genome to Enzymes and Pathways focuses on discovering and … vital to DOE missions. Using bioinformatics tools and genome portals, we study lignocellulose decomposition, CO2 … analyses of fungi and community annotation. … Phytozome is the JGI's Plant Comparative Genomics portal. …

… by viruses. Research in the viral genomics group aims at improving our collective understanding of ecological and … al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG).  Nature Biotech .  37 , 29–37 Roux S, et …

… them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the molecular … advancing the bioeconomy, environmental sustainability, and improving bioenergy crops. … The Metabolomics Program is …

UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … favorite topic in, arguably, my area of expertise, which is genome mining. You’ll hear us talk about what it is, hear me … JGI paper that’s just come out where I got the chance to do genome mining on more than 50,000 genomes that we derived …

… of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. … also encouraging community engagement and data exchange. … Phytozome is the JGI's Plant Comparative Genomics portal. …

… techniques and data analyses compile original data for improving fungal genomic resources empower students through isolation and genome sequencing of new fungal species.  Students collect … Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ …

The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … and characterizing microbial diversity, work in the Metagenome Program uses several experimental approaches to …

… and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to the following Data … made publicly available on relevant JGI portals (i.e. JGI Genome/Data Portal, MycoCosm, PhycoCosom, Phytozome, or IMG) and outside repositories (e.g. NCBI SRA …

Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) 256/404 Fungal Standard Draft Whole genome shotgun sequencing using long-read sequencing. Exact … DNA needed for these projects. Assembly, annotation for ( Phytozome for plant, Phycocosm for algae) depends on genome …

… listed on the “info” page for that organism on the Genome Portal . … You can view the status of all public projects on the JGI Genome Portal . The PI and all authorized users can also … (citation: https://doi.org/10.1093/nar/gkaa898 ) Plants: Phytozome (citation: https://doi.org/10.1093/nar/gkr944 ) …