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Genome Insider is a podcast that showcases the work of JGI … encoded in plants, fungi, microalgae, environmental viruses, and bacteria to contribute to a more sustainable …

The Metagenome Program uses advanced sequencing technologies to … archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. Beyond exploring and … flow. One of the key goals of the Program is to develop a deeper understanding of microbial community assembly and …

Gary Trubl, a virologist at Lawrence Livermore National Laboratory, wants to understand how viruses impact the release of greenhouse gases from Arctic permafrost. But to see what they’re doing, he first …

DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a podcast about natural … Prodcast. We’ve both taken a little bit of time off. Genome Insider still has been coming out, but I have been a …

… however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at … group . Research Team … Coclet, C. and Roux, S. (2021) Global overview and major challenges of host prediction … al. (2019) Minimum Information about an Uncultivated Virus Genome (MIUViG).  Nature Biotech .  37 , 29–37 Roux S, et …

Gary Trubl, a virologist and postdoc at Lawrence Livermore … is using bioinformatics and isotopes to track how viruses influence the flow of carbon in permafrost.  …

… with microeukaryotes. The program also studies giant viruses. Key research areas include terrestrial … driven prioritization lists for laboratory isolation and genome sequencing of underexplored bacterial and archaeal … single-cell sequencing, resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates …

Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and … genomic information from uncultivated microbes and viruses. We develop computational approaches to sift through … for stable isotope probing metagenomics . mSystems , e01280-22. 10.1128/msystems.01280-22 Clum, A. et al. (2021)  …

… of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to … and analytical tools for all JGI sequencing projects. In 2021, the JGI launched the Data Portal to eventually replace the Genome Portal. … GOLD is a web resource for …

… has been a pioneering effort in functional genomics since 2012, with a focus on addressing critical energy and … the DOE's vision for a sustainable, bio-based economy. … Genome to Enzymes and Pathways focuses on discovering and … Metabolic engineering traditionally utilizes a stepwise approach for strain development, requiring cycles of …

… of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … (2022) Giant virus biology and diversity in the era of genome-resolved metagenomics. Nature Reviews Microbiology … Marine amoebae with cytoplasmic and perinuclear symbionts deeply branching in the Gammaproteobacteria. Scientific …

… ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily achievable … a simple web-based form and are reviewed annually. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s funding of the JGI. There is no cost …