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… by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA preparation.  JGI sample QC protocols can be found here . DNA Extraction Protocols: … …

Below is a brief description of the process needed to prepare and ship samples for … or [email protected] . … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of … workflows and provide guidance as to how to perform sample QC prior to shipment: Importance of Sample QC Sample Quality …

Tijana Glavina del Rio , Danielle Graham , or Miranda Harmon-Smith DNA Synthesis projects: Miranda Harmon-Smith … proposals, sample and project metadata, and to access JGI tools and systems. … Go to the “ edit contacts ” page in … lists sample-level metadata such as sample IDs and names, QC results, SRA accessions, library names, and protocol and …

… of biofuels, biochemicals and other bioenergy solutions.  The program has been a pioneering effort in functional … innovative screening technologies and computational tools that enhance biofuel production and biosystem design. … and pathways vital to DOE missions. Using bioinformatics tools and genome portals, we study lignocellulose …

…   The JGI’s Secondary Metabolites Program focuses on the exploration of … support users, our efforts include developing computational tools for predicting biosynthetic gene clusters (BGCs), … of cell- and cell free-based expression platforms, tools and data for deciphering regulatory networks, and …

… and algae to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and … fungal and algal pangenomes, and integrate multi-omics tools to enhance functional studies. These efforts seek to … portal provides data access, visualization, and analysis tools for comparative genomics of fungi. Mycocosm enables …

… metabolites, genes, and proteins. It also enables exploration of energy and nutrient exchange, as well as microbial and … advanced mass spectrometry techniques and computational tools, the program supports foundational research related to … functions. The Metabolomics Program focuses on advancing tools and technologies to analyze metabolites in …

… challenges by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and … behind phenotypic evolution. It also utilizes advanced tools, including deep learning algorithms for gene … very large-scale single genomes, based on the JGI assembly tool meraculous. It is now available for both eukaryotic and …

Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is done by … group and focused on new technologies and optimizing tools — including strain engineering — to make them more … Informatics Group : a team that develops data science tools for workflow management and novel automations for DNA …

… gRNA-SeqRET , an organism-agnostic CRISPR gRNA design tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination and Golden Gate methods SynTrack and …

… to decode the genomes of microbes in their natural environments. This work encompasses bacteria, archaea, and … evolution. The Program focuses on developing computational tools and visualization resources that support user analysis … elements, linked to custom interfaces and visualization tools for user analysis. Additionally, the Program works to …

The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis … available genomes from three domains of life. It provides tools for analyzing the functional capability of microbial … and Initiatives … Microbial Program Head … Resources and Tools …