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The JGI’s Microbial Program focuses on using cutting-edge sequencing, … from environmental samples.  … The IMG/M system serves as a community resource for comparative analysis and annotation … around the world. … Integrated Microbial Genomes and Microbiomes … Integrated Microbial Genomes — Plasmid …

JGI to be the first to publish the sequence analysis of the target chromosomes 5, 16, and 19, in the journal Nature . … went on to advance basic science by sequencing scores of microbial species as well as several model organisms and … sediments (coastal here defined  by NOAA as the area within 185 km/100 nautical miles of land), and the …

… genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … clades. We leverage  genome-resolved metagenomics and targeted gene searches to expand representation of … inquires to Simon Roux, who is the Viral Genomics Lead within the program.  … Resources and Tools …

… data science.  Research in the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. The … A global metagenomic map of urban microbiomes and antimicrobial resistance. Cell . 184(13):3376-3393 Almeida A, et … colitis reveals a disease-associated bacteriophage community.  Nat Microbiol. 3(9):1023-1031 Harrington LB et …

… genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research … it has also become possible to identify speciation events within existing species. Within the JGI’s production … Integrated Microbial Genomes (IMG) system serves as a community resource for analysis and annotation of genome and …

… has developed, tested and deployed a pipeline to first target cells from communities of uncultivated microbes, and … strides in generating genome sequences for members of the microbial world through bulk community sequencing … the JGI’s  Emerging Technologies Opportunity Program . The ETOP helps researchers develop technology that can then be …

The Community Science Program (CSP) provides the scientific community at large with access to high-throughput … assemblies, gene annotations, and analyses available to the community at large. In most cases where the JGI provides …

… exploration of energy and nutrient exchange, as well as microbial and plant responses to environmental changes. With … of high performance plants and microbes, and understanding microbiome interactions. The  insights derived are crucial … data to gain insights into how small molecules function within plants, microbes, and ecosystems. Identifying and …

… of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties encoded within those genomes. Our aim is to more fully capture … Team    … Nayfach S et al.  A Genomic Catalog of Earth’s Microbiomes .  Nature Biotechnology . 2020 Nov 9. Vyshenska, …

… program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation that faculty will … of Energy Joint Genome Institute, builds upon thousands of microbial genomes that have been sequenced by the JGI though … public datasets.  … The Integrated Microbial Genomes & Microbiomes system ( IMG/M ) supports the annotation, …

… a description of the product and deliverables as well as target cycle times from sample receipt to completion of … physical separation of a biologically relevant unit from a microbial community, such as a microcolony, microbial … Used for the identification of active groups of organisms within a community. Individual samples are fractionated …