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… bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … and phylogenomics) and machine learning to identify new divergent lineages and expand the Tree of Life. We then investigate the coding potential to find novel functions that may impact microbiome structure …

… FY 2026 DOE Metrics Sequencing Quarter Total Bases (Trillions) … hours.   FY 2025 DOE Metrics There were 2,627 unique* JGI users in FY2025 , which includes Principal Investigators … available hours. Other DOE Quarterly Metrics Q1 – Report on new computational developments for improving microbial, …

… The JGI’s data stewardship expertise and infrastructure enable a … to develop new algorithms, models and tools in support of DOE mission priorities. Data discoverability and … from a single investment will be reused for further science.  NOTICE The Data Portal application has replaced …

… The JGI’s Science Programs offer support to users and their research … approaches for and with users, and create computational tools and resources for them. Their concerted efforts help … the JGI’s impact in advancing both user science and the DOE science mission. Prospective users are encouraged to …

… With collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global … plant-microbe interactions, advancing efforts to create renewable energy sources and bolster agricultural resilience. … energy — and its implications for carbon sequestration, renewable energy and agricultural productivity. Research spans …

… The Community Science Program (CSP) provides the scientific community at … sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  Mission Areas . Through this program, the DOE aims to … first undergo technical review by JGI staff, while the DOE ensures that they meet DOE mission relevance .  During …

… The Joint Genome Institute and the Molecular Foundry have launched a joint Critical Minerals and Materials proposal call . This … proposals  here that integrate genomics with nanoscale science, accelerating discoveries and developing … Access to the Molecular Foundry and use of JGI capabilities is free. The JGI supports remote users. …

… to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing the genomes of these organisms, the … cycling, biodegradation and biogeochemistry. This research helps translate their genomic potential into practical …

… Biology is currently experiencing a revolution brought on by rapid developments in … approaches in data analysis and interpretation is creating new opportunities for breakthrough discoveries and catalyzing a major transition of biology into data science.  Research in the Kyrpides group focuses on …

… Natural Prodcast, a podcast about natural products and the science and scientists of secondary metabolism. Hey there, … up a tiny bit and just say what antiSMASH actually is and does. Marnix Medema: Yeah. So antiSMASH. We built antiSMASH … of question have you applied them? Dan Udwary: Well, at JGI we have the Atlas of Biosynthetic Clusters . And this is …

… The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique opportunity for … to request the capabilities and expertise of multiple DOE National User Facilities in one research proposal.  … free to the PI by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. …

… data portal I’ve been working on with my colleagues Drew Doering and Bryce Foster and too many others to name at JGI for the last two years or so. SMC is now released and … long, it’s definitely because we like talking about our science. So, sorry, but not really sorry. I haven’t …