Search

The JGI’s Microbial Program focuses on using cutting-edge sequencing, … and interactions, the Microbial Program supports innovations in sustainable agriculture, carbon sequestration … single-cell sequencing, resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates …

FY 2025 DOE Metrics Sequencing Quarter Total Bases (Trillions) … hours.   FY 2024 DOE Metrics There were 2,456 unique* JGI users in FY2024 , which includes Principal Investigators … Q1 – Report on new computational developments for improving microbial, metagenomic, or plant genome assemblies. …

… genetic elements. Beyond exploring and characterizing microbial diversity, work in the Metagenome Program uses … such as quantitative stable isotope probing (qSIP)-metagenomics and metatranscriptomics, to metagenomics and … viral populations. Enabling microbiome data science:  The JGI supports microbiome data science by enabling comparative …

… demands of our users. … Download plant, algal, fungal and microbial genomes and metagenomes — top-quality genomic data, open to all researchers. … The JGI Genome Portal provides unified access to all JGI genomic … access, visualization, and analysis tools for comparative genomics of fungi. Mycocosm enables users to navigate across …

Celebrating 25 years of genomics research 2022 marked the JGI’s 25th anniversary. We … energy and environmental challenges.  Commissioned for the JGI’s 25th anniversary, the JGI mural references dozens of …

The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … genomic data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research … within IMG. While ANI is integrated within IMG, ani.jgi.doe.gov serves the current data. … The mission of the …

The JGI mural on the 3rd floor of the Integrative Genomics Building whimsically references dozens of iconic JGI contributions to advancing the frontiers of …

… of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties … communities and ecosystem function.  The Environmental Genomics group also hosts the Viral Genomics group . … Clum, A. et al. (2021)  DOE JGI metagenome workflow …

All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley … In working toward a shared vision with members of the JGI advisory committees, we welcome and encourage openness, …

… to request the capabilities and expertise of multiple DOE National User Facilities in one research proposal.  … be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting of funds. … samples of the spatial, temporal, taxonomic (environmental, microbial, plants, invertebrate, and vertebrate), and …

… data for synthesis. This agreement, required by the DOE for all work performed in its User Facilities, is a … must have their home/employing institution sign a JGI Non-Proprietary User Agreement and Appendix. An Appendix … rights, rights in technical data, project reporting to the DOE, and publication requirements. An official with …

JGI Mission As a U.S. Department of Energy Office of Science … a sustainable bioeconomy. ALL PROPOSALS must support the DOE/BER Mission Areas we serve, see below.  … The U.S. … went on to advance basic science by sequencing scores of microbial species as well as several model organisms and …