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… and bioeconomy applications. The program provides high-quality, large-scale genomic data to advance microbial … with microeukaryotes. The program also studies giant viruses. Key research areas include terrestrial … The program aims to generate high-quality genomic datasets, particularly for uncultivated microorganisms, by …

CheckV can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … effort to develop guidelines and best practices for defining virus data quality. Summary Characterizing viral …

… symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are … and complex ecosystem that includes bacteria, fungi, viruses. Resident viruses can be found in a myriad of … atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled the association between the …

DOE mission-oriented research and contributing validated datasets to further gene function research. The  Open Green … Genomes (OGG) project seeks to develop comparative high quality genomes and annotations across the plant kingdom to … to discover syntenic orthologs, generate publication quality graphics and explore pangenome views of genes within …

… extracted from metagenomes, and also as a metric for quality control within IMG. While ANI is integrated within … and distribution of microbial genome and microbiome datasets sequenced at the JGI. IMG/M is also open to … and distribution of their own genome and microbiome datasets, as long as they agree with the IMG/M data release …

… ( GEBA-type strains project ), the delineation of host-virus interactions, the exploration of the functional dark … S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . … 6(7):960-970. Nayfach S, et al. (2021) CheckV assesses the quality and completeness of metagenome-assembled viral …

… archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. Beyond exploring and … and microbial interactions, including microbe-microbe and virus-microbe interactions, over ecological and evolutionary … microbial lineages. Charting viral ‘dark matter’:   Viruses are abundant in the biosphere and influence …

… using long-read sequencing. Exact library types and quality of finished product depend on genome. Selected … Depends on project Microbial Minimal Draft, Isolate Draft quality microbial assembly of short-read sequence data, many … ) 108/161 Viral Enrichment Draft quality assembly from virus pools/plaques obtained from a single host, many …

… analysis, visualization and interpretation using public datasets.  … The Integrated Microbial Genomes & Microbiomes … distribution of prokaryotic microbial genome and microbiome datasets. It includes JGI-sequenced and publicly available datasets encompassing >150,000 isolate genomes, 230,000 …

… that most entries were looked at more at once, and so the quality – the data quality – was reasonably high. And yeah, it gave it gave us … resources which provide large, high quality, well curated datasets upon which to base those sorts of tools. So I think …

… based metabolite profiling to provide direct biochemical datasets to improve our understanding of microbial …

… protocols Obtaining DNA and RNA of suitable quantity and quality has been the rate-limiting step for many projects at the JGI. The quality of the starting material is one of the greatest … sample QC prior to shipment: Importance of Sample QC Sample Quality and Contamination JGI’s Genomic DNA Sample QC …