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… The Metagenome Program uses advanced sequencing technologies to … and characterizing microbial diversity, work in the Metagenome Program uses several experimental approaches to … The Metagenome Program focuses on the high-throughput sequencing … tools and visualization resources that support user analysis of biogeochemically-relevant pathways, enabling …

… computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … applications. By recovering population genomes from metagenomes, we gain insights into microbial interactions, … high-throughput SIP (Nuccio et al. 2022) and terabase-scale metagenome combined assemblies (Hofmeyr et al. 2020) we are …

… going to talk about JGI’s Community Science Program , or CSP, which is the main mechanism by which users work with … for you, we sequenced thousands for you or thousands metagenomes. And I think also the quality that we provide. … to offer you. So there’s a lot of– we also have a lot of analysis pipelines, be it for, again, metagenome, …

… drive critical ecosystem functions and affect global nutrient cycling, however they do so under strong constraints exerted … and virus genomes have been assembled and reported from metagenomes, our understanding of the impacts of these … Roux, S., Paul, B.G., Bagby, S.C. et al. (2021) Ecology and molecular targets of hypermutation in the …

… The CSP Functional Genomics call is to enable users to perform … accepted proposals, sequencing, synthesis, metabolomics and analysis will be provided for free to the PI by the …

… The CSP New Investigator Call is for investigators and research … PIs cannot have been lead PI on any previously accepted JGI CSP or FICUS proposal.   Competitive projects will provide … accepted proposals, sequencing, synthesis, metabolomics and analysis will be provided for free to the PI by the …

… accepted proposals, sequencing, synthesis, metabolomics and analysis will be provided for free to the PI by the … For the CSP Large Scale call, a Letter of Intent (LOI) is required …

… and proteins. It also enables exploration of energy and nutrient exchange, as well as microbial and plant responses … the program supports foundational research related to soil nutrient cycling and health, terrestrial biogeochemical processes, … a combination of experimental workflows and computational analysis, JGI scientists are able to link metabolic activity …

… artificial Intelligent/machine learning approaches in data analysis and interpretation is creating new opportunities … the Kyrpides group focuses on Microbiome Data Science and analysis of Big Data. The Research Team   … in the group include the sequencing and comparative analysis of thousands of archaeal and bacterial type strains …

… cycle times from sample receipt to completion of standard analysis.  Raw data is provided for all sequencing products … submit raw sequence data to  SRA at NCBI once the standard analysis is complete. Raw metabolomics data is submitted to … Program leads to discuss available options. Note: In 2021, we conducted an extensive internal product audit to …

… focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of … enhances our understanding of terrestrial biogeochemical cycling and inter-organismal interactions. These insights … explored to predict microbial lifestyles using AI-driven analysis of such datasets. The program also collaborates …

… data. The JGI Data Policy applies to research data and analysis products (referred to as “data” for the remainder … FY22 and later through the Community Science Program (CSP), Facilities Integrating Collaborations for User Science … data are subject to a  one-year embargo .  For each data or analysis product (raw or processed), the embargo starts at …