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CSP Functional Genomics
The CSP Functional Genomics call is to enable users to perform … and ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily … and track record of the applicant.  Learn about the general review process or find details on the internal …
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Natural Prodcast Episode 18: A CSP Primer
… going to talk about JGI’s Community Science Program , or CSP, which is the main mechanism by which users work with … to find info about the CSP, FICUS, New Investigator and Functional Genomics calls. For my audience, all of these … I think for Natural Prodcast, I think the question that generally comes up that people come to me asking like is– …
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CSP New Investigator Call
The CSP New Investigator Call is for investigators and research … PIs cannot have been lead PI on any previously accepted JGI CSP or FICUS proposal.   Competitive projects will provide … and track record of the applicant.  Learn about the general review process or get details on the internal …
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CSP Large Scale Call
… production, leveraging systems-based approaches to unravel functional capabilities of plants, microbes and microbial … is no cost to the user and no granting of funds. … For the CSP Large Scale call, a Letter of Intent (LOI) is required … and track record of the applicant.  Learn about the general review process or get details on the internal …
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Examples: Successful LOIs & Submissions
Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating … PIs who drafted them.  … Elucidating Sphagnum microbiome genetic interactions for improved growth at elevated …
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User Programs
… to the user and no granting of funds.   Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics Status CLOSED CLOSED ONGOING ONGOING Who …
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Environmental Genomics Group
… better understanding of microbial communities and ecosystem function.  The Environmental Genomics group also hosts the … e01280-22. 10.1128/msystems.01280-22 Clum, A. et al. (2021)  DOE JGI metagenome workflow … Ladau, J. et al. (2019)  Spatial, Temporal, and Phylogenetic Scales of Microbial Ecology . Trends Microbiol. …
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DOE Metrics
… target is based on 98% of the total available hours.   FY 2021 DOE Metrics There were 2,180 unique* JGI users in FY2021 , which includes Principal Investigators (PIs), Co-PIs, … % of Goal Goal (hours)** Actual Total Actual % Goal FY 2021 Total 250.0 467.195 187% 8,760 8,568 99.8% Q1 2021 …
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Microbiome Data Science Team
… include exploration of the global diversity of alternative genetic codes (Science 2014), unearthing hundreds of … of host-virus interactions, the exploration of the functional dark matter as well as the development of novel … bacteriophages. Cell . 185(21):4023-4037 Nayfach S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… pathways, which led her to a successfully funded JGI CSP project. And we also got to talk about work at her … oftentimes will bind to receptors within biosynthetic gene clusters. Specifically, these are Tet repressors that … on DAP-Seq: Enlarging Windows into Understanding Gene Functions Purdue's page on mental health resources. It might …
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Community Science Program
The Community Science Program (CSP) provides the scientific community at large with access … call is for PIs who have never led a JGI project, and the Functional Genomics call is for projects that translate … the completion of a project, the JGI makes the assemblies, gene annotations, and analyses available to the community at …
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Metabolomics Program
… metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables exploration of energy … with genomic data to gain insights into how small molecules function within plants, microbes, and ecosystems. … JGI scientists are able to link metabolic activity with gene expression, providing deeper insights into functional …
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