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Natural Prodcast Episode 18: A CSP Primer
… while, but Natural Prodcast is back again for another round of episodes. If you stick around for the next few months, … going to talk about JGI’s Community Science Program , or CSP, which is the main mechanism by which users work with … the capabilities that we offer get updated on a regular basis as some of the more boutique, I’m going to call them, …
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CSP Large Scale Call
… critical minerals and materials, inter-organismal interactions, and predictive biology, modeling and biodesign — questions of relevance to DOE’s Biological and Environmental Research … While applications will be accepted that address any aspect of these mission areas, priority will be given to projects …
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CSP New Investigator Call
… The CSP New Investigator Call is for investigators and research … initiatives new to the JGI. Projects must be independent of ongoing JGI proposals, and lead PIs cannot have been lead PI on any previously accepted JGI CSP or FICUS proposal.   Competitive projects will provide …
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CSP Functional Genomics
… The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them … synthesis and ‘omics capabilities to enhance understanding of gene and genome function, particularly those not readily … data usage by the applicant/community, and track record of the applicant.  Learn about the general review process or …
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DOE Metrics
… (Trillions) Operating Hours Goal  Actual Total*   Actual % of Goal   Goal (hours)**   Actual Total   Actual % Goal   FY … target is based on 98% of the total available hours.   FY 2021 DOE Metrics There were 2,180 unique* JGI users in FY2021 , which includes Principal Investigators (PIs), Co-PIs, …
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our Community Science … Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating … Elucidating Sphagnum microbiome genetic interactions for improved growth at elevated temperatures …
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Viral Genomics Group
… group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host … involves both experimental and computational exploration of uncultivated viral diversity, characterization of molecular mechanisms involved in virus:host interaction …
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Environmental Genomics Group
… develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct … and viral diversity, leading to a better understanding of microbial communities and ecosystem function.  The … Our research focuses on the assembly of metagenomic sequence data into microbial genomes, which …
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Plant Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … and are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, … fungi, viruses. Resident viruses can be found in a myriad of bacterial strains, whereby they can modulate host …
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Microbiome Data Science Team
… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … advances in management, processing and visualization of “big data,” and artificial Intelligent/machine learning … breakthrough discoveries and catalyzing a major transition of biology into data science.  Research in the Kyrpides …
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Data Policy
… Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … the need to have a limited and time-sensitive protection of certain types of data to support their use by those … FY22 and later through the Community Science Program (CSP), Facilities Integrating Collaborations for User Science …
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Microbial Program
… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … associated with microeukaryotes, enhances our understanding of terrestrial biogeochemical cycling and inter-organismal interactions. These insights are crucial for addressing key …
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