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Natural Prodcast Episode 18: A CSP Primer
… going to talk about JGI’s Community Science Program , or CSP, which is the main mechanism by which users work with … today. Mostly, I think it all comes to explaining what a CSP is, how you apply for and get one, and what happens once … research to support and conduct. I already told you what a CSP is, but one other program I think we mention is FICUS, …
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CSP New Investigator Call
The CSP New Investigator Call is for investigators and research … PIs cannot have been lead PI on any previously accepted JGI CSP or FICUS proposal.   Competitive projects will provide … a novel approach or form the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed …
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CSP Functional Genomics
The CSP Functional Genomics call is to enable users to perform …
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CSP Large Scale Call
… is no cost to the user and no granting of funds. … For the CSP Large Scale call, a Letter of Intent (LOI) is required …
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Secondary Metabolites Program
… platforms, tools and data for deciphering regulatory networks, and refining experimental approaches to explore … and  Streptomyces lysate systems. Deciphering regulatory networks of secondary metabolite biosynthesis: We have … of BGC size and complexity, BGC sequence composition, metabolic similarity & compatibility, and signatures of …
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Examples: Successful LOIs & Submissions
Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and … and abundant soil bacterium: genetic microdiversity or core metabolic flexibility? … Microbial contributions to soil … plant-fungal symbionts … Elucidation of the gene regulatory networks governing terpenoid-mediated plant environment …
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Natural Prodcast Episode 15: Katherine Duncan
… fundamental things, like, are we waking them up? Are they metabolically active and slowly ticking away at these … if we’ve woken them up or if they were slowly ticking away metabolically, way down under the ocean in Antarctica. Dan … at all that space in the data of– if you look at molecular networks and how much is characterized and how much is …
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Partnerships Development Team
… industry engagement through three primary routes:  … The CSP provides the scientific community at large with access … improving sustainable soil management practices. … In June 2020, the Department of Energy announced the  2020 TCF projects . One of them supports a project between …
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DOE Metrics
… target is based on 98% of the total available hours.   FY 2020 DOE Metrics There were 2,038 unique* JGI users in FY2020 , which includes Principal Investigators (PIs), Co-PIs, … % of Goal Goal (hours)** Actual Total Actual % Goal FY 2020 Total 250.0 290.492 116% 7,932 5,616 70.8% Q1 2020 …
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Environmental Genomics Group
… of viruses and novel microbial lineages, and reconstruct metabolic properties encoded within those genomes. Our aim … Catalog of Earth’s Microbiomes .  Nature Biotechnology . 2020 Nov 9. Vyshenska, Dariia et al. (2023)  A standardized … Catalog of Earth’s Microbiomes .  Nature Biotechnology . 2020 Nov 9. doi: 10.1038/s41587-020-0718-6. Ladau, J. et al. …
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Microbiome Data Science Team
… resistance. Cell . 184(13):3376-3393 Almeida A, et al. (2020) A unified catalog of 204,938 reference genomes from … Nature Biotechnol.  39(1):105-114. Schulz F, et al. (2020) Giant virus diversity and host interactions through …
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User Programs
… to the user and no granting of funds.   Proposal Call FICUS CSP Large Scale CSP New Investigator CSP Functional Genomics Status CLOSED CLOSED ONGOING ONGOING …
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