DOE Joint Genome Institute

  • COVID-19
  • About Us
  • Contact Us
  • Our Science
    • DOE Mission Areas
    • Science Programs
    • Science Highlights
    • Scientists
    A vertical tree stump outdoors with about a dozen shiitake mushrooms sprouting from its surface.
    Tracing the Evolution of Shiitake Mushrooms
    Understanding Lentinula genomes and their evolution could provide strategies for converting plant waste into sugars for biofuel production. Additionally, these fungi play a role in the global carbon cycle.

    More

    Soil Virus Offers Insight into Maintaining Microorganisms
    Through a collaborative effort, researchers have identified a protein in soil viruses that may promote soil health.

    More

    Data yielded from RIViT-seq increased the number of sigma factor-gene pairs confirmed in Streptomyces coelicolor from 209 to 399. Here, grey arrows denote previously known regulation and red arrows are regulation identified by RIViT-seq; orange nodes mark sigma factors while gray nodes mark other genes. (Otani, H., Mouncey, N.J. Nat Commun 13, 3502 (2022). https://doi.org/10.1038/s41467-022-31191-w)
    Streamlining Regulon Identification in Bacteria
    Regulons are a group of genes that can be turned on or off by the same regulatory protein. RIViT-seq technology could speed up associating transcription factors with their target genes.

    More

  • Our Projects
    • Search JGI Projects
    • DOE Metrics/Statistics
    • Approved User Proposals
    • Legacy Projects
    A panoramic view of a lake reflecting a granite mountain.
    Genome Insider: Methane Makers in Yosemite’s Lakes
    Meet researchers who sampled the microbial communities living in the mountaintop lakes of the Sierra Nevada mountains to see how climate change affects freshwater ecosystems, and how those ecosystems work.

    Listen

    A light green shrub with spiny leaves, up close.
    Genome Insider: A Shrubbier Version of Rubber
    Hear from the consortium working on understanding the guayule plant's genome, which could lead to an improved natural rubber plant.

    Listen

    The switchgrass diversity panel growing at the Kellogg Biological Station in Michigan. (David Lowry)
    Mapping Switchgrass Traits with Common Gardens
    The combination of field data and genetic information has allowed researchers to associate climate adaptations with switchgrass biology.

    More

  • Data & Tools
    • IMG
    • Data Portal
    • MycoCosm
    • PhycoCosm
    • Phytozome
    • GOLD
    iPHoP image (Simon Roux)
    iPHoP: A Matchmaker for Phages and their Hosts
    Building on existing virus-host prediction approaches, a new tool combines and evaluates multiple predictions to reliably match viruses with their archaea and bacteria hosts.

    More

    Abstract image of gold lights and squares against a black backdrop
    Silver Age of GOLD Introduces New Features
    The Genomes OnLine Database makes curated microbiome metadata that follows community standards freely available and enables large-scale comparative genomics analysis initiatives.

    More

    Graphical overview of the RNA Virus MetaTranscriptomes Project. (Courtesy of Simon Roux)
    A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
    Researchers combed through more than 5,000 data sets of RNA sequences generated from diverse environmental samples around the world, resulting in a five-fold increase of RNA virus diversity.

    More

  • User Programs
    • Calls for Proposals
    • Special Initiatives & Programs
    • Product Offerings
    • User Support
    • Policies
    • Submit a Proposal
    Green plant matter grows from the top, with the area just beneath the surface also visible as soil, root systems and a fuzzy white substance surrounding them.
    Supercharging SIP in the Fungal Hyphosphere
    Applying high-throughput stable isotope probing to the study of a particular fungi, researchers identified novel interactions between bacteria and the fungi.

    More

    Digital ID card with six headshots reads: Congratulations to our 2022 Function Genomics recipients!
    Final Round of 2022 CSP Functional Genomics Awardees
    Meet the final six researchers whose proposals were selected for the 2022 Community Science Program Functional Genomics call.

    More

    croppe image of the JGI helix sculpture
    Tips for a Winning Community Science Program Proposal
    In the Genome Insider podcast, tips to successfully avail of the JGI's proposal calls, many through the Community Science Program.

    Listen

  • News & Publications
    • News
    • Blog
    • Podcasts
    • Webinars
    • Publications
    • Newsletter
    • Logos and Templates
    • Photos
    2022 JGI-UC Merced interns (Thor Swift/Berkeley Lab)
    Exploring Possibilities: 2022 JGI-UC Merced Interns
    The 2022 UC Merced intern cohort share how their summer internship experiences have influenced their careers in science.

    More

    image from gif that shows where in the globe JGI fungal collaborators are located.
    Using Team Science to Build Communities Around Data
    As the data portals grow and evolve, the research communities further expand around them. But with two projects, communities are forming to generate high quality genomes to benefit researchers.

    More

    Cow Rumen and the Early Days of Metagenomics
    Tracing a cow rumen dataset from the lab to material for a hands-on undergraduate research course at CSU-San Marcos that has since expanded into three other universities.

    More

News & Publications
Home › Podcasts
Page 3 of 6«12345...»Last »

April 19, 2022

Natural Prodcast Episode 17 – Cassandra Quave

Natural Prodcast guest Cassandra Quave makes the case for investigating the chemistries and pharmacological promise of plants. [Read More]

February 8, 2022

Genome Insider S2 Episode 10: Filling in the Plant Tree of Life

Logo of Genome Insider, podcast of the Joint Genome InstituteIn this episode, hear about a project that aims to unlock innovations in plants that could drive more productive food, medicine, and bioenergy crops. [Read More]

January 28, 2022

Natural Prodcast Episode 16 – Marcy Balunas

Natural Prodcast guest Marcy Balunas on the chemical exploration of natural products for bioactive compound discovery and other topics. [Read More]

November 23, 2021

Genome Insider S2 Episode 9: Creating an Energy Market for Miscanthus

Logo of Genome Insider, podcast of the Joint Genome InstituteIn this Genome Insider episode, Miscanthus is a prized ornamental and a potential fuel for the future. But, to be competitive in the market, both energy policy and Miscanthus will need some upgrades. [Read More]

October 19, 2021

Genome Insider S2 Episode 8: Dispatches From JGI Interns

Logo of Genome Insider, podcast of the Joint Genome InstituteIn this episode, hear two JGI-UC Merced interns from the 2021 cohort describe their deep dives into genomics, computational tools, and big data. [Read More]

September 14, 2021

Genome Insider S2 Episode 7: THE Bioenergy Tree

Logo of Genome Insider, podcast of the Joint Genome InstituteScientists are uncovering the poplar tree’s genetic secrets, bringing us closer to a sustainable source of bioenergy and materials. [Read More]

August 30, 2021

Natural Prodcast Episode 15 – Katherine Duncan

This Natural Prodcast episode features Katherine Duncan from the University of Strathclyde in Glasgow, Scotland. Her work focuses on marine microbial chemical ecology. [Read More]

August 10, 2021

Genome Insider S2 Episode 6: Back to the Future! A Sorghum Story

Logo of Genome Insider, podcast of the Joint Genome InstituteHear how sorghum’s historical — and literal — roots could play a big role in our energy future. [Read More]

August 9, 2021

Natural Prodcast Episode 14 – Nigel Mouncey

Natural Prodcast podcast logoNatural Prodcast features JGI Director Nigel Mouncey, lead of the JGI’s Secondary Metabolites Science Program. Dr. Mouncey shares his vision for the JGI that sees secondary metabolism analysis and research as a driver for novel technologies that can serve all JGI users. [Read More]

June 8, 2021

Genome Insider S2 Episode 5: A Powerful Technique to Study Microbes, Now Easier

Logo of Genome Insider, podcast of the Joint Genome InstituteIn this episode of JGI’s Genome Insider: Jennifer Pett-Ridge teamed with JGI scientists to improve a protocol, using robots to help process experiments that measure microbial activity in soil. [Read More]
Page 3 of 6«12345...»Last »

More topics:

  • COVID-19 Status
  • News
  • Science Highlights
  • Blog
  • Webinars
  • CSP Plans
  • Featured Profiles
  • Careers
  • Contact Us
  • Events
  • User Meeting
  • MGM Workshops
  • Internal
  • Disclaimer
  • Credits
  • Policies
  • Emergency Info
  • Accessibility / Section 508 Statement
  • Flickr
  • LinkedIn
  • RSS
  • Twitter
  • YouTube
Lawrence Berkeley National Lab Biosciences Area
A project of the US Department of Energy, Office of Science

JGI is a DOE Office of Science User Facility managed by Lawrence Berkeley National Laboratory

© 1997-2023 The Regents of the University of California