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Calculating the Costs of Multiple Switchgrass Gene Copies
… have discovered that the candidate bioenergy feedstock switchgrass has adapted to expand its habitat range. But at … A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for … biofuel yield through a changing future. Switchgrass has multiple naturally occurring ploidy levels, called …
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Plant-Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … single-cell and spatial transcriptomics barcode-based genetics (RB-TnSeq), and computational genomics to better … a bioenergy plant single-cell atlas comprising Sorghum, Switchgrass, and Brachypodium datasets. We recently profiled …
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Products
Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … product audit to analyze the scientific value, demand, and costs of current offerings in the JGI product catalog. As a … DNA Synthesis Constructs <5kb in size Single gene or multiple small genes assembled to less than 5kb in length, …
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Natural Prodcast Episode 14: Nigel Mouncey
… … DAN: Hello, everyone, and Welcome back for Episode 14 of Natural Prodcast . There’s been a lot going on, so I took … my undergraduate in microbiology and then PhD in microbial genetics in the UK. And came across to the US for a couple … to create more product or you’ve been able to lower the costs.  DAN: Do you have any – or the ability to say, like, …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
In honor of the JGI's 25th anniversary in 2022, we have revisited a … that will help solve energy and environmental challenges. Switchgrass is a native, shrubby grass that can grow … large polyploid genome, which means most genes are found as multiple copies across the chromosomes. In a follow-up study …
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Plant Program
… to current problems facing humanity. A major focus are biofuel feedstock species and plant-microbe interactions, … to regulate Earth's carbon balance, to exploring the genetic basis of how plants have naturally adapted to varied … regions of interest and gene copy number variation across multiple genomes. It provides the ability to discover …
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Secondary Metabolites Program
Secondary Metabolites Program focuses on the exploration of secondary metabolites across bacteria, fungi, algae and … conditions, with only a small portion of the biosynthetic gene clusters (BGCs) being expressed. The program works to … factors and determine their binding sites across multiple genomes. Computational prediction of heterologous …
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FICUS
… for researchers to request the capabilities and expertise of multiple DOE National User Facilities in one research … the capabilities across at least two of the facilities, and generate datasets beyond what each of these facilities could …
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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, required … ACADEMIC, NON-PROFIT or COMMERCIAL PROPOSALS with MULTIPLE COLLABORATORS: The submitting researcher’s home …
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Natural Prodcast Episode 23: Aaron Puri
… … DAN: Hey, everybody. Welcome back for another episode of Natural Prodcast. Right now I’m working on this the … and he has a project with the JGI to synthesize the genes for and explore the chemistry of quorum sensing … And one would envision that microorganisms have evolved multiple variations of these compounds. And so if you’re …
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Metabolomics Program
The JGI’s Metabolomics Program works to uncover the roles of small molecules in biological systems, linking them with genomic data to enhance our understanding of genome science, organisms, and ecosystems at the … metabolomics fuels the discovery  of novel metabolites, genes, and proteins. It also enables exploration of energy …
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Exploring the Diversity of the American Prairie’s Switchgrass
A tall native plant of the North American prairie, switchgrass ( Panicum virgatum ) has long been a tantalizing … traits — height, biomass, hardiness to cold, etc. — to its genes. The undertaking took shovels, trucks — and more than …
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