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With collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global challenges by exploring plants’ role in capturing carbon, detoxifying soils, … and environmental sustainability. … Plant Flagship Genomes are selected through discussion with the JGI Plant …

The Plant Program Advisory Committee is chartered to offer … on the effective management and strategic objectives of the plant program. The committee serves as the program's key …

I got the chance to do genome mining on more than 50,000 genomes that we derived from meta-genome sequences. As … in order to challenge or kill off competition, right? And plants do the same sorts of things. And then, bacteria often … mining. So we’re here in California. And gold mining was a big endeavor. And I’m no expert, but the way that I …

… curator there, with a broad range of experimental work on plants for drug discovery in antibiotics, anticancer, and … So these are some things that even if you’re not like a big pharma company and you’re just like an assistant … it’s not that easy. There are still not that many plant genomes, certainly nowhere close to bacterial kinds of …

… and quality of finished product depend on genome. Selected genomes will be improved based on feasibility and scientific … annotation (single organism). Note: smRNA sequencing is no longer supported. For annotation: de novo assembly. For … contigs. Assembly, annotation ( IMG ) Depends on project Plant and Algal Standard Draft Whole genome shotgun …

… advances in management, processing and visualization of “big data,” and artificial Intelligent/machine learning … group focuses on Microbiome Data Science and analysis of Big Data. The Research Team   … The research efforts of the … 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science …

… common tools that genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and … and a tool for predicting natural product structures from genomes. And I was writing grants furiously to try to get … called “disease suppression”, where the microbiome of a plant, so the bacteria living on and inside the roots are …

Pennacchio PMO Lead, Metabolomics Program Kerrie Barry Plant and Algal Genomics Natasha Brown Supply Chain Manager …

… and bioproducts. By sequencing and analyzing the genomes of these organisms, the program investigates the … functioning — particularly in their roles associated with plants (mycorrhizae, endophytes, growth promoters, or pathogens) and as the most efficient degraders of plant biomass. These abilities are crucial for sustainable …

… ranging conversation, and we could have gone on for a lot longer than we did, and I can say without reservation that … the JGI Secondary Metabolism Collaboratory , which is the big huge monster thing that’s been keeping me busy for a … BRIAN BACHMANN: That’s right. JACKIE WINTER: And it was a big deal. And you really had– I mean, the whole sequencing …

… data and serving them to users via the Integrated Microbial Genomes & Microbiomes (IMG/M) system. Research Team    … The Integrated Microbial Genomes group is focused on:  Developing state-of-the-art … Development and maintenance of the Integrated Microbial Genomes (IMG) data management system … As part of this …

… they merged with Beecham and SmithKline and became a much bigger company. But, yeah, he was mucking around with … bio-process R&D, BBRD, a group of about 75 people. So our biggest project was the spinosyn family of insecticides that … with a contract manufacturer to actually have them build a plant for production and fermentation and transfer that …