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    A vertical tree stump outdoors with about a dozen shiitake mushrooms sprouting from its surface.
    Tracing the Evolution of Shiitake Mushrooms
    Understanding Lentinula genomes and their evolution could provide strategies for converting plant waste into sugars for biofuel production. Additionally, these fungi play a role in the global carbon cycle.

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    Soil Virus Offers Insight into Maintaining Microorganisms
    Through a collaborative effort, researchers have identified a protein in soil viruses that may promote soil health.

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    Data yielded from RIViT-seq increased the number of sigma factor-gene pairs confirmed in Streptomyces coelicolor from 209 to 399. Here, grey arrows denote previously known regulation and red arrows are regulation identified by RIViT-seq; orange nodes mark sigma factors while gray nodes mark other genes. (Otani, H., Mouncey, N.J. Nat Commun 13, 3502 (2022). https://doi.org/10.1038/s41467-022-31191-w)
    Streamlining Regulon Identification in Bacteria
    Regulons are a group of genes that can be turned on or off by the same regulatory protein. RIViT-seq technology could speed up associating transcription factors with their target genes.

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    A panoramic view of a lake reflecting a granite mountain.
    Genome Insider: Methane Makers in Yosemite’s Lakes
    Meet researchers who sampled the microbial communities living in the mountaintop lakes of the Sierra Nevada mountains to see how climate change affects freshwater ecosystems, and how those ecosystems work.

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    A light green shrub with spiny leaves, up close.
    Genome Insider: A Shrubbier Version of Rubber
    Hear from the consortium working on understanding the guayule plant's genome, which could lead to an improved natural rubber plant.

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    The switchgrass diversity panel growing at the Kellogg Biological Station in Michigan. (David Lowry)
    Mapping Switchgrass Traits with Common Gardens
    The combination of field data and genetic information has allowed researchers to associate climate adaptations with switchgrass biology.

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    iPHoP image (Simon Roux)
    iPHoP: A Matchmaker for Phages and their Hosts
    Building on existing virus-host prediction approaches, a new tool combines and evaluates multiple predictions to reliably match viruses with their archaea and bacteria hosts.

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    Abstract image of gold lights and squares against a black backdrop
    Silver Age of GOLD Introduces New Features
    The Genomes OnLine Database makes curated microbiome metadata that follows community standards freely available and enables large-scale comparative genomics analysis initiatives.

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    Graphical overview of the RNA Virus MetaTranscriptomes Project. (Courtesy of Simon Roux)
    A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
    Researchers combed through more than 5,000 data sets of RNA sequences generated from diverse environmental samples around the world, resulting in a five-fold increase of RNA virus diversity.

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    Green plant matter grows from the top, with the area just beneath the surface also visible as soil, root systems and a fuzzy white substance surrounding them.
    Supercharging SIP in the Fungal Hyphosphere
    Applying high-throughput stable isotope probing to the study of a particular fungi, researchers identified novel interactions between bacteria and the fungi.

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    Digital ID card with six headshots reads: Congratulations to our 2022 Function Genomics recipients!
    Final Round of 2022 CSP Functional Genomics Awardees
    Meet the final six researchers whose proposals were selected for the 2022 Community Science Program Functional Genomics call.

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    croppe image of the JGI helix sculpture
    Tips for a Winning Community Science Program Proposal
    In the Genome Insider podcast, tips to successfully avail of the JGI's proposal calls, many through the Community Science Program.

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    2022 JGI-UC Merced interns (Thor Swift/Berkeley Lab)
    Exploring Possibilities: 2022 JGI-UC Merced Interns
    The 2022 UC Merced intern cohort share how their summer internship experiences have influenced their careers in science.

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    image from gif that shows where in the globe JGI fungal collaborators are located.
    Using Team Science to Build Communities Around Data
    As the data portals grow and evolve, the research communities further expand around them. But with two projects, communities are forming to generate high quality genomes to benefit researchers.

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    Cow Rumen and the Early Days of Metagenomics
    Tracing a cow rumen dataset from the lab to material for a hands-on undergraduate research course at CSU-San Marcos that has since expanded into three other universities.

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All JGI Features
Home › Archives for Ashleigh Papp
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November 14, 2022

JGI at 25: Stories from Intern Alumni

Hands-on experience can be life changing for students. Hear former JGI interns share how these experiences have influenced their career journeys. [Read More]

June 29, 2022

SPRUCE-ing Up Science

mentors and interns for JGI-UC Merced internship programFrom an internship with the JGI to studying climate change with ORNL, Travis Lawrence is grateful for the experience along the way. [Read More]

March 9, 2022

From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern

Rhondene Wint’s summer project through the JGI-UC Merced internship program grew into a three-year research endeavor, resulting in a recent publication. [Read More]

October 8, 2021

Exploring Phages at JGI

Oscar Davalos, UC MercedJGI-UC Merced intern Oscar Davalos explored a unique set of phages during his virtual summer 2021 internship experience at the JGI. [Read More]

October 8, 2021

Building on Experience, With a Twist?

Lorenzo Scaturchio, UC MercedIn Summer 2021, JGI-UC Merced intern Lorenzo Scaturchio built on his previous undergraduate internship experience at the JGI. [Read More]

October 8, 2021

A Journey Through the Evolution of the Mitochondria Internship, A Sequential Read

Jimmy Nunez, UC MercedJGI-UC Merced intern Jimmy Nunez walks readers through the internship experience – from application to lessons learned. [Read More]

October 8, 2021

Exploring Polymorphisms Created by Transposable Elements

Jacob Espinosa, UC MercedJGI-UC Merced intern Jacob Espinosa recaps his summer 2021 project involving a grass model species and charts his own scientific development. [Read More]

November 5, 2020

UC Merced Interns Reflect on Their JGI Summer Projects

Axel Visel screencap from the video introducing the 2020 JGI-UC Merced internsOver the summer, 10 students from UC Merced worked closely with JGI scientists on research projects that contribute to the larger mission of the U.S. Department of Energy. Students also worked with their mentors to practice and develop presentation skills as well as build their network in the field of genomics and scientific research. [Read More]

September 9, 2020

Genome Insider Episode 7: Decoding Yellowstone’s microbial mats

Logo of Genome Insider, podcast of the Joint Genome InstituteResearchers studying cyanobacteria in Yellowstone National Park encountered surprises, adopted new technologies, and made a few discoveries about the microbial mat denizens. [Read More]

August 20, 2020

Effects of Polar Light Cycle on Microbial Food Web

Effects of Polar Light Cycle on Microbial Food WebLight-harvesting bacteria (phototrophs) in Antarctica’s Ace Lake defy the norm when it comes to nutrient cycling in polar regions. [Read More]
Page 1 of 212»

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