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Data Ecosystem
… new capabilities and resources to users through a BER data ecosystem.  A data ecosystem is a connected resource where … biology. The collaborations present exciting possibilities for scientific exploration, granting access to diverse datasets that deepen our … to both expertise and infrastructure to facilitate these efforts. Particular areas of emphasis will be the development …
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Metagenome Program
… experimental approaches to assess microbial activity across ecosystems.  By studying microbial communities and their … diversity and metabolic potential, with implications for energy production, environmental sustainability, and … By understanding how microbes contribute to ecosystem functions, the Program helps drive innovations that could …
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Natural Prodcast Episode 16: Marcy Balunas
… and the bacteria and how the chemistry is going back and forth between them is part of what fascinates me about what … cancer medicines and I didn’t really know what that meant.  I was a chemistry major after being an optical … think might be happening, we’re sort of converging on this model of this being called an egg defense model. And so …
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CSP Functional Genomics
… The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them translate genomic information into biological function.  The emphasis is on … funding of the JGI. There is no cost to the user and no granting of funds. …
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Environmental Genomics Group
… approaches to identify and characterize genomic information from uncultivated microbes and viruses. We develop … approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and … to a better understanding of microbial communities and ecosystem function.  The Environmental Genomics group also …
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Viral Genomics Group
… Microbes drive critical ecosystem functions and affect global nutrient cycling, however they … host cell take-over by viruses, and attempts to evaluate ecosystem-level impacts of viral infections. The Viral … group attempts to address this question in natural soil ecosystems by combining metagenomics with other omics …
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New Lineages of Life Group
… We then investigate the coding potential to find novel functions that may impact microbiome structure and … Exploring the fascinating world of giant viruses, which challenge our understanding of viral … insights into viral evolution and complexity, and encode for a treasure trove full of novel genes ready to be tapped …
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Plant Program
… With collaborative user projects, the JGI’s Plant Program delves into the natural world’s potential to address global challenges by exploring plants’ role in capturing carbon, detoxifying soils, … to environmental changes. The program lays the groundwork for sustainable solutions to current problems facing …
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Microbial Program
… inter-organismal interactions. These insights are crucial for addressing key environmental challenges, such as … drives sustainable solutions in energy, agriculture and ecosystem management. … associated with microeukaryotes. The program also studies giant viruses. Key research areas include terrestrial …
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Plant Microbial Interactions Group
… Plants are complex organisms that harbor a fantastic diversity of cell types and associated organisms, … and associated viruses that all contribute to a dynamic ecosystem. We are interested in how plants self-organize, … Plant microbiomes hold the amazing ability to influence plant …
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Natural Prodcast Episode 11: Marnix Medema
… but he’s been dead center and a lot of the really important recent events in data analysis and secondary metabolism … genome miners use, including antiSMASH, MIBiG, and newer efforts, like BiG-scape and BiG-SLiCE, and now the BiG-FAM … I think this is really– I personally like this really as a model for a collaboration. You have your code as open source …
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CSP Large Scale Call
… genomic science projects that address biological functions for biomanufacturing, critical minerals and materials, … inter-organismal interactions, and predictive biology, modeling and biodesign — questions of relevance to DOE’s … DOE mission relevance, proposed data usage by the applicant/community, and track record of the applicant. For …
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