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Special Initiatives & Programs
… capabilities and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA …  should fill out this form . Please allow a minimum of  two weeks for your request to be processed. Investigators … U.S. Culture Collection Network (USCCN) to nominate their strains for sequencing, as long as they have a scientific …
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Natural Prodcast Episode 7: Ben Shen
Moving forward, I’m hoping to get a new one out every two weeks. This time, we’ve got a great interview with Ben … the paradigm of how to discover natural products. So, why I’m very excited to be working with Dan, you, with the … develop enabling technologies. ie how to translate the ATGC sequence into discrete small molecules. So, Dan, I’m very …
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Strain Engineering
The focus of this group, in recent years, has been to bring … expression and functional exploration.  The developed strains represent an additional phase of user-accessible … a taxonomically diverse suite of microbial chassis strains for elevated opportunity for expression. Research Team    … …
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Sequencing Submission Requirements for DNA Synthesis
When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  Miranda … add the characters “.gb” (no quotes, just .gb) to the end of your file name. …
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Natural Prodcast Episode 12: Nadine Ziemert
… there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And I think … gene classes I could start on. So… but you started with two genomes, right? DAN UDWARY: Right. NADINE ZIEMERT: And … it would work, but we actually found fosmids. And we sequenced the whole fosmid at the time with Sanger …
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Natural Prodcast Episode 23: Aaron Puri
… of their synthases so that we can start to use the DNA sequence to predict or just understand better the language … your interest in getting into natural products. DAN: Why are you here at SIMB? AARON PURI: Yeah. Thanks Jackie. … scientific audience whereas now I’m sitting here with two people who know way more about natural products than I …
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Sequencing Technologies
Group applies cutting edge molecular capabilities and state-of-the-art next-generation sequencing to enable biological discovery by the JGI and external DOE … significantly lowering costs. Staff process samples, perform quality checks, and prep libraries for sequencing. They …
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Fungal & Algal Program
The Fungal & Algal Program explores the vast diversity of fungi and algae to unlock their potential for bioenergy, … algae, examining both natural populations and engineered strains. This approach allows for the identification of key … The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of …
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Synthetic Biology Lab
… as user facility that aims to provide access to state-of-the-art DNA synthesis and assembly technologies to the broader community.  We focus our efforts on integrating database mining and sequence design with scaling the production of large, …
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Data Policy
Data produced and released by the US Department of Energy (DOE) Joint Genome Institute (JGI) are subject to … use. … For DNA synthesis projects: data are subject to a  two-year embargo starting at construct or strain delivery.  Detailed sequence information for constructs are made publicly …
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Synthetic Biology Informatics Group
Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that … tool BOOST , which provides a suite of tools to automate sequence design for assembly by Gibson, Yeast recombination …
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Natural Prodcast Episode 20: Brian Bachmann
… welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell you about in this introduction. … And at the time, it was really exciting when people would sequence [DNA]. The genome was– well, that hadn’t really … polyketide synthase and then P3. We still don’t know why 20 years later. JACKIE WINTER: It’s pretty amazing, …
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