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Sequencing Submission Requirements for DNA Synthesis
When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  … several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an …
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Natural Prodcast Episode 8: Eric Schmidt
… you maybe explain what’s going on with their biology and why they’re so important to natural products? ERIC:  Sure. … layman’s perspective, I would say. They sit there on the reef, or in whatever habitat they’re in. They’re not doing … turns a peptide, for example, from a disordered sequence into an antibiotic that kills bacteria through a …
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Sequencing Technologies
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Who We Are
… researchers and support staff in the Integrative Genomics Building in Berkeley, California.  Our location at the IGB …
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Natural Prodcast Episode 19: Bill Fenical
… learned a lot so much history from this conversation about why the ocean was basically unexplored until the 70s, and … get a lot of chemical compound from a beautiful coral reef animal. We didn’t want to collect all of the animals … forward to seeing the data when it finally gets off the sequencers. The pandemic has obviously slowed JGI down a …
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Natural Prodcast Episode 16: Marcy Balunas
… does some really exciting work there. And I thought, well, why don’t we try to go to Alaska and see what we can find … with any kind of gene cluster identification, doing it with sequence alone you have to have some kind of a template to … I think, for the fungus garden and some of the bacterial symbionts. And so of course, the work that we’re doing is …
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Plant-Microbial Interactions Group
… and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and associated …
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DNA Synthesis Program
Program aims to generate large datasets to explore sequence-function relationships, advancing the discovery of … strain development, requiring cycles of construct design, building, and characterization. In partnership with the … Science Group supports researchers exploring how to convert sequence into functional assessments. The team has a …
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New Lineages of Life Group
… and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, … al. (2015) Marine amoebae with cytoplasmic and perinuclear symbionts deeply branching in the Gammaproteobacteria. …
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Symbiodinium Transcriptomes: Genome Insights into the Dinoflagellate Symbionts of Reef-Building Corals
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Fungal & Algal Program
… for sustainable growth of biofuel feedstock and fungi, as symbionts, pathogens, and biocontrol agents dramatically … The  1000 Fungal Genomes Project is a five-year project to sequence 1000 fungal genomes from across the Fungal Tree of … of fungi. Mycocosm enables users to navigate across sequenced fungal genomes, and to conduct comparative and …
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Products
… sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … in length, cloned into vector of choice Glycerol stock of sequence verified clone 102/NA DNA Synthesis Constructs … in length, cloned into vector of choice Glycerol stock of sequence verified clone 170/NA DNA Synthesis Constructs …
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