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… cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and … This is a dynamic and complex ecosystem that includes bacteria, fungi, viruses. Resident viruses can be found in a … Sai Prahabkar (UC Merced Intern) … Plant / Bacteria / Viral Interactions … Single-cell characterization of …

… to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those associated with … of terrestrial biogeochemical cycling and inter-organismal interactions. These insights are crucial for addressing key … resequencing, RNA sequencing and epigenomics. Expansion of sequence space:  The JGI generates reference genomes from …

… of Oceanography in San Diego. Bill is a pioneer of marine natural products, getting into the ocean and looking … learned a lot so much history from this conversation about why the ocean was basically unexplored until the 70s, and … forward to seeing the data when it finally gets off the sequencers. The pandemic has obviously slowed JGI down a …

… grade list of goals in life: on that list are being a marine biologist and being a chemist, and it’s actually … you maybe explain what’s going on with their biology and why they’re so important to natural products? ERIC:  Sure. … turns a peptide, for example, from a disordered sequence into an antibiotic that kills bacteria through a …

… there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And I think … quality. Yeah, for sure. NADINE ZIEMERT: Yeah, Dan… it’s a marine actinomycete bacterium. So they look kind of like … it would work, but we actually found fosmids. And we sequenced the whole fosmid at the time with Sanger …

When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  … several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an …

… in their natural environments. This work encompasses bacteria, archaea, and micro-eukaryoes, along with their … ecosystems.  By studying microbial communities and their interactions, the Program aims to unlock the fundamental … comprising the largest public collection of plasmid sequences identified from genomes, SAGs, MAGs, metagenomes …

… wouldn’t it be cool to look at these– it was actually marine invertebrates there– but look at these things in the … Duncan: Yeah. I love actinomycetes. Dan Udwary: Tell us why. I mean, I know, but I think– Alison Takemura: I want to … of almost finished characterizing them. We’ve got genome sequences, which are just incredible. We’ve looked at the …

… is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, … in cell biology. 25 (6), 339-346 Schulz et al. (2015) Marine amoebae with cytoplasmic and perinuclear symbionts …

… working with him.  We talk about his father, the legendary marine natural products chemist, Richard Moore, and get into … then genomics happened. Dan: Yeah, I did my first genome sequence with you. Brad: That’s right,  Dan: JGI did it in … working with you, Dan, on this one, and we said, “Well, why don’t we have you know, the bioinformaticians go against …

… does some really exciting work there. And I thought, well, why don’t we try to go to Alaska and see what we can find … and so we were able to actually not dive to collect the marine tunicates, which was nice because it’s also cold. And … with any kind of gene cluster identification, doing it with sequence alone you have to have some kind of a template to …