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… and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to identify new divergent lineages and expand the Tree of Life. We then investigate …

… Group is well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and … molecular capabilities and functional genomics, scaling capacity through end-to-end automation — and further advancing sequence applications, single cell genomics, biodesign, and …

… When submitting sequences to the JGI DNA Synthesis program, please include the … Sequence files for all constructs should be emailed to  Miranda Harmon-Smith, Synthetic Biology Project Manager . … several easy-to-use open source tools for converting DNA sequence files into well-formed GenBank files. ApE is an …

… recent work like ActDES, which is a curated database of actinobacteria for evolutionary studies, and hopefully we … least, talk to us, first about my definitions of things and why I am wrong, and also talk about some of the great … to approach it is more related to what JGI does, which is sequence genomes. And we just published last year in the …

… cutting-edge sequencing, annotation and analysis techniques to explore the vast and diverse world of microbes. Studying … The program provides high-quality, large-scale genomic data to advance microbial research that drives sustainable … Program focuses on using advanced sequencing technologies to explore microbial diversity — with an emphasis on …

… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI. … follow the steps outlined below. Click the drop-downs to learn more about each step in the process. If you have … 1) Review JGI sample QC requirements and protocols Obtaining DNA and RNA of suitable quantity and …

… focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from … microbes and viruses. We develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial lineages, and reconstruct metabolic properties encoded …

… a couple biology classes in undergrad, but my PhD was an actinobacteria. And I tell all my students this now, but … Duncan: Yeah. I love actinomycetes. Dan Udwary: Tell us why. I mean, I know, but I think– Alison Takemura: I want to … of almost finished characterizing them. We’ve got genome sequences, which are just incredible. We’ve looked at the …

… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of … highlights our skewed understanding of microbial metabolism towards a minority of cultivated bacteria, still persists to … is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which …

… there are any kind of dated references to the news, that’s why. But it was a really fun conversation. And I think … so far no species or no strains known that really grow in freshwater. But they’re actually pretty orange, and they … it would work, but we actually found fosmids. And we sequenced the whole fosmid at the time with Sanger …

… The Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural … the Metagenome Program uses several experimental approaches to assess microbial activity across ecosystems.  By studying … communities and their interactions, the Program aims to unlock the fundamental principles that govern ecosystem …