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… however they do so under strong constraints exerted by viruses. Research in the viral genomics group aims at improving our collective understanding of ecological and evolutionary parameters driving virus:host …

… … Dan Udwary: You’re listening to the Department of Energy Joint Genome Institute’s Natural Prodcast, a … recent events in data analysis and secondary metabolism over the last decade or so. He’s involved with a lot of the … Thanks. Alison Takemura: Definitely. Wow. Yeah. What a time. Four months. Marnix Medema: Yeah. Remember Dan, when …

… uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. This work … archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic elements. Beyond exploring and … The Program also aims to build a global-scale catalog of viral, microbial, and microeukaryote genomes and mobile …

Below is a brief description of the process needed to prepare and ship samples for … includes instructions on accessing sample-level reports and tracking statuses.  Please follow the steps outlined below. … the blue “reports” button on the right side. The Project Overview report includes project-level metadata such as the …

… analysis techniques to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those … associated with microeukaryotes. The program also studies giant viruses. Key research areas include terrestrial … the largest publicly available collection of Uncultivated Viral Genomes, derived from genomes, metagenomes, and …

… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational … (Science 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, … Nature Biotechnol.  39(1):105-114. Schulz F, et al. (2020) Giant virus diversity and host interactions through global …

… research is focused on the discovery and characterization of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. We use multi-omics … at Google Scholar. Schulz, C Abergel, T Woyke (2022) Giant virus biology and diversity in the era of …

Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … Pool of variant libraries; sample sequencing to determine coverage of variants depends on project Fungal Minimal Draft … reference transcriptome), DGE, alignment files 134/134 Viral Minimal Draft Draft quality viral assembly, many …

… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are … Sai Prahabkar (UC Merced Intern) … Plant / Bacteria / Viral Interactions … Single-cell characterization of …

Virophages are small viruses with double-stranded DNA … in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … discussed an early version of the paper at the 2018 Viral EcoGenomics & Applications (VEGA) Symposium. The work …

… genomic information from uncultivated microbes and viruses. We develop computational approaches to sift through thousands of metagenomes for signatures of viruses and novel microbial … genomes. Our aim is to more fully capture microbial and viral diversity, leading to a better understanding of …

Hey, everyone! Welcome to the “Self Promotion Episode” of Natural Prodcast. A little bit of a bonus episode, since … has been on a few episodes now, and I figured we were way overdue to give her a proper introduction and a chance to … genome right now. But eventually, it will be– it could be a viral sequence. It could be a contig. It could be whatever …