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Frequently Asked Questions: Proposal Submission
… letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call … view the proposal templates, go to the proposal submission page , login using your JGI account (create one here if you … applicants from any institution type and at any career stage. Generally, most users are able to work with Berkeley …
Learn more
Natural Prodcast Episode 18: A CSP Primer
… a mixture of, for example, metatranscriptome sequencing, metagenomics, single cell genomics. We even do the flow … and work within the DOE emission space of bioenergy, carbon cycling, biogeochemistry, bioproducts. So we cannot … after the initiation call. But throughout the whole lifecycle of the proposal, it’s a very collaborative process …
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Fungal & Algal Program
… that enable fungi and algae to play a vital role in carbon cycling, biodegradation and biogeochemistry. This … play a critical role in ecological processes such as carbon cycling, biodegradation and biogeochemistry. The … that have direct applications in bioenergy production, carbon management, and environmental sustainability. Fungi, …
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Natural Prodcast Episode 7: Ben Shen
… on DNA sequencing and synthetic biology. But also the metagenomics and gut microbiome, as I think that it’s like a … compounds, Alison. They are – if you can imagine – two carbons in a triple bond attached to two carbons in a double … genome, the genome predicts they often can produce around 30 – more than 30 compounds. So, this was a complete …
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Microbial Program
… environmental challenges, such as improving soil health, carbon sequestration and bioeconomy applications. The … and archaeal lineages to improve phylogenetic analysis, metagenomic annotations, and function distribution. These are … capability of microbial communities based on their metagenome sequence, in the context of reference isolate …
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Products
… of the product and deliverables as well as target cycle times from sample receipt to completion of standard … change etc) and structural rearrangements, alignment files 384/454 Fungal Transcriptome RNA for expression profiling … metabolites and unidentified features in spectra. 167/214 Metagenome Metatranscriptome Environmental transcript sequence …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… other-- DAN: True. BETSY PARKINSON: --aspects of the life cycle, but we're just particularly interested in their … allow that to bind. Your receptor also typically has some tag so that you can then pull down the receptor with that … Understanding of Natural Product Induction Betsy's lab webpage and the page on the From Microbes to Medicines outreach …
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Metagenome Program
The Metagenome Program uses advanced sequencing technologies to … and characterizing microbial diversity, work in the Metagenome Program uses several experimental approaches to … communities contribute to critical processes such as carbon cycling, nutrient cycling, and energy flow. One of …
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Natural Prodcast Episode 23: Aaron Puri
… about. He works with methylotrophs, which are a group of carbon-fixing bacteria that I would say are are still fairly … bound to it and maybe there will be some a affinity tag or a fluorescent tag, and so you can use that as a … like a nice summer day in Seattle I think this was like 2013 or 2014. And antiSMASH — I know you’ve interviewed Marnix …
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Plant Program
… global challenges by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, … accessions) and protocols (transformation, crossing, mutagenesis) are available to the community.   … EcoFABs link … It is now available for both eukaryotic and microbial metagenome assemblies. It is also available as an app in KBase …
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Frequently Asked Questions: Project Management
… access JGI tools and systems. … Go to the “ edit contacts ” page in your account. Use the form to update all information … sites: Microbes: IMG (citation: https://doi.org/10.1093/nar/gkaa939 ) Metagenomes and Single Cells: IMG/M   (citation: …
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Examples: Successful LOIs & Submissions
… metabolic flexibility? … Microbial contributions to soil carbon storage during simulated range shifts of plant-fungal … of simplified soil communities with high and low carbon use efficiency across differing moisture treatments … …
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