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Frequently Asked Questions: Proposal Submission
… letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call … applicants from any institution type and at any career stage. Generally, most users are able to work with Berkeley … to work with Berkeley Lab, a process which can take 6 months or longer to obtain with no guarantee of approval. …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… about several different pieces of her work, including bacterial quorum sensing and its effects on regulation of … allow that to bind. Your receptor also typically has some tag so that you can then pull down the receptor with that … Understanding of Natural Product Induction Betsy's lab webpage and the page on the From Microbes to Medicines outreach …
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Plant-Microbial Interactions Group
… cell types and associated organisms, including fungal and bacterial symbionts, detrimental microbial pathogens, and … This is a dynamic and complex ecosystem that includes bacteria, fungi, viruses. Resident viruses can be found in a … cross-sections. … 10.1038/s41579-020-0381-4 10.1038/s41396-020-0637-z 10.1038/s41477-024-01666-3 …
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Microbial Program
… to explore the vast and diverse world of microbes. Studying bacteria and archaea, including those associated with … and archaeal lineages to improve phylogenetic analysis, metagenomic annotations, and function distribution. These are … capability of microbial communities based on their metagenome sequence, in the context of reference isolate …
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Secondary Metabolites Program
… focuses on the exploration of secondary metabolites across bacteria, fungi, algae and plants. These molecules, which … not essential for fundamental growth, provide critical advantages to the organisms producing them, and are often … reservoir of secondary metabolites produced by bacteria, fungi, algae and plants. These compounds are key …
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Single Cell Research Group
… of microbial metabolism towards a minority of cultivated bacteria, still persists to date. Research Team    … … genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic potential … through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., Leahy S. C., Attwood G. T., Teh K. …
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Partnerships: Myco-Ed
Myco-Ed has:  ~50 lineages selected for sequencing 16 genomes released 20 members from 15 institutions 300+ … Ed Fungal Genomics Education Project MycoCosm MycoEd group page Protocols, teaching materials and bioinformatics …
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Natural Prodcast Episode 15: Katherine Duncan
… biology classes in undergrad, but my PhD was an actinobacteria. And I tell all my students this now, but when I … exciting. And why chemistry is so far behind in that stage is it’s still really difficult to do natural products … It’s them that do it. They created the Wiki. They edit the pages. They add the content. They run the Twitter account. …
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Natural Prodcast Episode 23: Aaron Puri
… colleagues. Aaron is doing some cool stuff with cool bacteria that I’m fascinated to learn more about. He works … bound to it and maybe there will be some a affinity tag or a fluorescent tag, and so you can use that as a … Stable Isotopic Labeling . ACS Chem Biol. 2021 Aug 20;16(8):1332-1338. doi: 10.1021/acschembio.1c00329. …
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Natural Prodcast Episode 18: A CSP Primer
… show notes, which you can always access through JGI’s webpage at  naturalprodcast.com , along with transcripts and … a mixture of, for example, metatranscriptome sequencing, metagenomics, single cell genomics. We even do the flow … for you, we sequenced thousands for you or thousands metagenomes. And I think also the quality that we provide. So …
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Natural Prodcast Episode 19: Bill Fenical
… into the secondary metabolism of some more novel marine bacteria. You know, I first met Bill as a postdoc working … we want to talk a little bit about. It’s sort of early stages. But I think that is emblematic of some of the … with the National Cancer Institute who had a panel of 60 different cancer cell lines. And we would send them these …
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Natural Prodcast Episode 17: Cassandra Quave
… of ground – her book, bioprospecting vs biopiracy, early stage drug discovery in general, and a possible data-driven … has a book called The Plant Hunter and I’ve read all 400 pages of her life and I feel like I have a new friend that … a check-up on me. And I wonder how that intersects with bacterial bioprospecting that is often done, where we’re …
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