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… vast and diverse world of microbes. Studying bacteria and archaea, including those associated with microeukaryotes, … and archaeal lineages to improve phylogenetic analysis, metagenomic annotations, and function distribution. These are … capability of microbial communities based on their metagenome sequence, in the context of reference isolate …

… the sequencing and comparative analysis of thousands of archaeal and bacterial type strains ( GEBA-type strains … Unraveling the functional dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. … Cell . 185(21):4023-4037 Nayfach S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human …

… the gap between cultivated and uncultivated Bacteria and Archaea has steadily been widening since 2005. This gap is … genomes are critical to serve as phylogenetic anchors for metagenomes studies.  While uncovering the metabolic potential … virus diversity and host interactions through global metagenomics.” Nature 578(7795): 432-436 (2020). Seshadri R., …

The Metagenome Program uses advanced sequencing technologies to … their natural environments. This work encompasses bacteria, archaea, and micro-eukaryoes, along with their associated … and characterizing microbial diversity, work in the Metagenome Program uses several experimental approaches to …

… bound to it and maybe there will be some a affinity tag or a fluorescent tag, and so you can use that as a readout of activity. And I … was jumping onto the I ntegrated Microbial Genomes and Metagenomes, the IMG platform that JGI has that really got me …

Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes. Nature Microbiology. 4 , …

… systems determine mutualism or parasitism between some archaeal hosts and their hitchhikers. The Science Within the … symbiotic interactions are difficult to study in the lab. Metagenomics provides new views of these relationships.  … the microorganisms had a close relationship. Then, using metagenomes and metatranscriptomes generated by the U.S. …

Metagenome-assembled archaeal genomes provide new insights into an ancient … carbon dioxide. Billions of years ago, methane-producing archaea likely played a key role in determining the … Office of Science User Facility, for publicly available metagenome data provided by the other study co-authors, and …

… mentor students, teaching classes, and really setting the stage for what I really wanted to do and getting to– so I … genomes. But IMG is microbial genomes — mostly bacteria and archaea. And we knew that secondary metabolism is … rest of the archaea and fungal genomes and then work on metagenomes. So yeah. So we’ve taken every public sequence …

… challenges.     Our homepage video includes external footage from:  University of Delaware Laura.Selbmann©PNRA. All … environmental mission objectives. Fungi, algae, bacteria, archaea, viruses, and microbial communities of interest to …

… generated as part of Genomic Encyclopedia of Bacteria and Archaea (GEBA) initiative. “This project has helped to … the JGI has pioneered, including single-cell genomics and metagenomics. The GEBA initiative has also utilized a very … with nearly 5,000 publicly available ones and 1,100 metagenome-assembled genomes (MAGs) reconstructed from …