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Institutional User Agreements
… — before any work can begin, including the submission of samples for sequencing, or the submission of sequencing data for synthesis. This agreement, … performed in its User Facilities, is a legally binding contract.   All User researchers must have their …
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Sequencing Submission Requirements for DNA Synthesis
When submitting sequences to the JGI DNA Synthesis program, please include the following items: … Sequence files for all constructs should be emailed to  Miranda Harmon-Smith, …
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Sequencing Technologies
… molecular capabilities and state-of-the-art next-generation sequencing to enable biological discovery by the JGI and … They apply Lean Six Sigma practices to process optimization and development approaches, testing various platforms to see what works best for applications. The team works hand in hand with the Project Management …
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Frequently Asked Questions: Proposal Submission
See below for a list of Frequently Asked Questions about our proposal submission process. You can review … for advice!      … The deliverables can range from raw sequence data to well-annotated assembled genomes to … listing of approved proposals can be found here. All sequence data will be accessible on the JGI Data Portal.   … …
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Metagenome Program
… to decode the genomes of microbes in their natural environments. This work encompasses bacteria, archaea, and micro-eukaryoes, along with their associated viruses and mobile genetic … comprising the largest public collection of plasmid sequences identified from genomes, SAGs, MAGs, metagenomes …
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Products
… in: DNA and RNA sequencing, Sample and library preparation, DNA synthesis and pathway engineering Mass spectrometry … sequencing products below. In addition, JGI will submit raw sequence data to  SRA at NCBI once the standard analysis is … in length, cloned into vector of choice Glycerol stock of sequence verified clone 102/NA DNA Synthesis Constructs …
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JGIota: Looking Back at Sequencing for Soybeans
The soybean is a crop that could boost biofuels and fertilize … So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome … have been able to look into soybean’s strengths – along with a fungus that threatens this important crop. Hear …
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How to Submit Sequencing Samples
Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level … pipelines.  You will receive automated emails as raw sequence data becomes available, and as analysis is …
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A Step Toward Controlling Soybean Rust
The United States  is the world’s leading soybean producer , and soybeans are used to produce … Rust (ASR) and is the major pathogen of soybean. Left uncontrolled, soybean rust could reduce crop yields by as much … JGI Flagship plant genome , and JGI  published its genome sequence in 2010.       … The U.S. Department of Energy …
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have … help solve energy and environmental challenges. Maximizing soybean yield is critical to energy independence in the U.S. … first legume species with a published complete draft genome sequence. At the time, the vital global source of both …
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Natural Prodcast Episode 10: A Primer on Genome Mining
… about natural products and the science and scientists of secondary metabolism. Welcome back for our second season of … more than 50,000 genomes that we derived from meta-genome sequences. As always, you’ll find transcripts and show notes … wise maybe, what genome mining is, then, is looking at DNA sequence and trying to find the things that you want to …
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FICUS-NERSC/KBASE
The mission of the Joint Genome Institute is to serve the scientific … … For sequencing projects, once work is under way, raw sequence data is released to NCBI’s Sequence Read Archive on a regular basis, in accordance with …
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